[Fri Aug 26 17:03:29 2016] >Input file: TMQ1QRH0M1D.pdb >TM segments: 92-103_ 115-124_ 126-145 MAIDEN score = 9.6280 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Q99 -N117 10 G92 -L121 3.9730357110563 H126 -R131 1.34138320037458 D122 -L140 1.18101171377377 A116 -W144 0.879974946240782 F128 -V136 0.706754459244826 L121 -L140 0.679553233705003 V93 -F120 0.672919201963018 F128 -G138 0.615202655323331 Y118 -G145 0.559162330365791 V93 -L121 0.553368050700757 G98 -S119 0.525416677850566 F128 -R139 0.500590637948425 G97 -F120 0.476639036592343 T123 -F128 0.451725526850781 F120 -T143 0.442933110437008 G96 -Y118 0.431216103267191 S119 -W144 0.416736716023006 V129 -V136 0.410043936626952 F120 -L140 0.402920519417915 F128 -G134 0.359358392672302 L121 -Y142 0.358049177585636 M95 -S119 0.300642417983896 D122 -Y142 0.290384098008436 L121 -R139 0.283165056074721 D122 -V136 0.272567317668763 G96 -D122 0.272484367429635 Y118 -Y142 0.265686131096045 T123 -G138 0.26301963841072 G97 -T143 0.260169977808482 G96 -L121 0.237892935901767 Q99 -F120 0.23523925477356 T123 -T143 0.234875310985091 G97 -N117 0.231955136915451 N124 -L140 0.226694721219315 F94 -Y142 0.225474913954156 M95 -W144 0.219371345918832 G134 -Y142 0.214859654182881 H126 -G138 0.214548934464343 F94 -Q99 0.2103071592809 R131 -V136 0.200211281806053 D122 -V129 0.191374859009056 F94 -N117 0.188270960892799 I100 -W144 0.184246835031251 N124 -G134 0.178402508073017 D122 -R131 0.175902806787934 S135 -Y142 0.175653091039411 D122 -T143 0.174342914068583 D122 -T137 0.172454615472956 H126 -G132 0.162569612387211 G97 -G141 0.153138478912788 I100 -A116 0.145054062882129 Y118 -L140 0.144614516789666 D122 -G141 0.141449433130642 I100 -G145 0.138936054137716 G92 -G98 0.134822901867119 G92 -F120 0.134759504559895 G97 -G115 0.132482613424694 G132 -T137 0.130848083469433 T123 -S135 0.128258691228257 I100 -S119 0.123967718944364 P127 -Y142 0.118784725116559 G115 -W144 0.117535614060929 T123 -R131 0.11616865386134 N130 -T137 0.108819177085487 V129 -L140 0.101463956036355 G96 -G145 0.10093769523041 Y102 -G145 0.0982247156209093 G92 -T143 0.0976686106592624 G96 -A116 0.0962916692475227 F120 -G138 0.0950341723325914 D103 -A116 0.093379616774854 V93 -S119 0.089960524313903 G101 -A116 0.0883790050819826 M95 -T143 0.0854014171983003 G132 -G138 0.0840570243596819 H126 -G141 0.0813406273841366 F128 -L133 0.0796374432719862 M95 -A116 0.0792624533588859 R131 -T137 0.0786377808854438 G138 -T143 0.0779242969309095 G98 -G141 0.0776969245393742 L121 -P127 0.076306855088589 I100 -N117 0.0746852017889279 G101 -G145 0.0735842140587002 Q99 -Y142 0.0735098455640877 G96 -T123 0.0719388837688486 H126 -S135 0.0697511729059318 V93 -T143 0.0687371901586239 N124 -G138 0.0669976368681775 F94 -T123 0.0613163759113446 G98 -L121 0.0604151881739523 G96 -L140 0.0583037050162176 P127 -G141 0.057288584367049 G92 -S119 0.0572330891276618 L121 -G141 0.0563472229867852 N124 -S135 0.0539741433971481 D122 -S135 0.051786896319135 H126 -L133 0.0450122154474238 G98 -Y118 0.0446291371875778 Y102 -N117 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