[Mon Aug 29 17:09:04 2016] >Input file: TMQ1RAX6M1G.pdb >TM segments: 359-374_ 404-420 MAIDEN score = -3.7707 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V409 -V414 0.365393838662588 G360 -A365 0.329147261450063 L415 -G420 0.245336541742899 V409 -E416 0.174839259974702 P371 -L408 0.161734879996616 D362 -A367 0.138545677293101 G360 -I366 0.119377512500857 A372 -G407 0.115905595993912 T410 -L415 0.101501686438576 A364 -S370 0.0987599888831037 V405 -T410 0.0966915277844453 D413 -I418 0.0938934132916298 A364 -A369 0.0915512348294758 P411 -I418 0.0774562720452612 A367 -A372 0.0753208485828858 V361 -I366 0.0740653821175412 G407 -V414 0.0688323802743813 P371 -T410 0.0683661089281582 D362 -S368 0.0657126971859006 L408 -D413 0.0645341732367459 G360 -A367 0.0534032203914538 I373 -Q406 0.0528553905800466 A372 -V405 0.0507488245173748 S368 -I373 0.0376020713496206 T410 -G420 0.025949417700778 L408 -V414 0.0216363761005853 I366 -A372 0.0215041539872241 V363 -A369 0.0187838092260968 A365 -A372 0.0180503859878134 P371 -V409 0.0178131611221971 I374 -V405 0.0124806644352091 A372 -Q406 0.00863462145320648 I366 -P371 0.00718060785838293 A365 -P371 0.00232808336710555 P371 -G407 0.00154358398910182 V409 -I418 -0.000555611902759878 I374 -T410 -0.00386688103178301 L408 -L415 -0.00674665336821256 P371 -V404 -0.00875596093180864 T410 -I418 -0.00920120513251721 G407 -D413 -0.0094512168267385 I373 -G407 -0.0101861346287739 V361 -A367 -0.0120090026670496 T410 -A419 -0.0145775524594756 S370 -L408 -0.0158230540103594 A372 -P411 -0.0233885360949679 G360 -S368 -0.0256095212218521 I374 -P411 -0.0263737939972755 V409 -A417 -0.0277865360768793 E359 -A365 -0.029982679478467 A369 -I374 -0.035271216425989 P411 -A419 -0.0366805318582388 Q406 -D413 -0.0386751259144593 V363 -S370 -0.0399882591865586 V363 -S368 -0.0437103958658233 D413 -G420 -0.0549186767966248 P371 -Q406 -0.0557812946388969 P411 -G420 -0.0579368025453122 P371 -V405 -0.0646532562880004 E359 -A367 -0.0654012814015186 G407 -L412 -0.0726984144403424 V409 -L415 -0.0946458345759691 I373 -P411 -0.107433815235222 I373 -V404 -0.111549311414989 T410 -E416 -0.115025591342659 P411 -A417 -0.11680577497351 I374 -V404 -0.124577721075847 T410 -A417 -0.125423302151177 A372 -V409 -0.131858615967952 I373 -T410 -0.137312953935296 A372 -T410 -0.14953214678581 I373 -V405 -0.159030919360214 L408 -E416 -0.166137516811554 D413 -A419 -0.171177759442477 V414 -A419 -0.191418085212948 I374 -Q406 -0.195053764785363 I373 -V409 -0.196272368290663 A365 -S370 -0.196775564208712 V414 -G420 -0.201564381688113 P411 -E416 -0.209868237914188 I374 -G407 -0.217337176449972 A372 -L408 -0.218917685191102 I374 -L408 -0.244300905456061 L412 -A419 -0.249287582463873 E359 -A364 -0.299595337356699 L412 -A417 -0.302819500137957 L412 -G420 -0.312670540254623 I373 -L408 -0.387655305317097 I374 -V409 -0.408647536429681 L412 -I418 -0.415432898540667