[Fri Aug 26 17:10:45 2016] >Input file: TMQ21281S1D.pdb >TM segments: B504-515 MAIDEN score = -0.3899 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I505B-L511B 0.0984735325749053 A504B-Y510B 0.0704622417801968 Y510B-T515B -0.0542902335799582 R506B-L511B -0.121354191177134 A504B-E509B -0.14133878887092 I505B-Y510B -0.241811711301447