[Mon Aug 29 17:16:33 2016] >Input file: TMQ21T40M8G.pdb >TM segments: 72-90_ 133-142 MAIDEN score = 8.3172 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- W83 -C90 10 F82 -C90 0.607719521171644 L73 -V78 0.537907856395908 W83 -P141 0.364623347268089 N81 -C87 0.280431289222496 W83 -G139 0.256948896165242 L79 -P134 0.226417178630738 F82 -V135 0.207445318945793 N81 -P134 0.183413287807696 W83 -L137 0.157885486364839 N81 -P89 0.1577967810488 F82 -F133 0.134654964655802 F82 -G139 0.12967132584214 A84 -C90 0.128293315867605 V78 -V136 0.105634598155833 L79 -L137 0.101267179199579 L73 -V136 0.0998150843260368 L79 -V136 0.0973611332442603 V135 -V140 0.0965407064151753 L80 -P134 0.0946520695074895 T85 -G139 0.0922710746018318 A84 -V136 0.0912027277248184 L80 -V135 0.0894905510059907 L79 -V135 0.0741743964603213 R74 -L80 0.0722241062598239 C90 -V136 0.0672477541871324 V136 -G142 0.0671566881172803 F82 -L137 0.0636006567452663 N81 -A138 0.0609834636590141 V78 -P134 0.0609400938409568 R74 -L79 0.060847900437818 A84 -G142 0.0603736654855713 N81 -F133 0.0417015264248621 T85 -L137 0.0403190673843969 L80 -L137 0.0390603445787452 V78 -F133 0.0374981980470781 F82 -P134 0.0315035086992799 N81 -C90 0.0261501411742202 V136 -P141 0.017151914333625 S72 -V136 0.01620289714826 N81 -G139 0.00808950100816386 N81 -G142 -0.00178970075851836 G75 -L80 -0.00322473938650114 F82 -G142 -0.00356697809708173 F82 -P89 -0.00699752323414438 A84 -V135 -0.0123262100636252 L79 -F133 -0.0129655794454511 T85 -V136 -0.0137773279077225 F82 -A138 -0.0141497623365376 W86 -P141 -0.0169835066281664 C87 -L137 -0.0212473544102663 W83 -P88 -0.0237634589971529 F82 -V140 -0.0242772956135686 A84 -V140 -0.0247030145582743 L79 -C90 -0.0344356497293341 A84 -L137 -0.0355193338591675 L80 -G142 -0.0361342062700052 T85 -C90 -0.0362616835379495 V78 -V135 -0.0372558388621917 V135 -P141 -0.0405743657724709 A84 -P141 -0.0415780359106721 L73 -L80 -0.0425888140098731 L73 -P134 -0.0533120117582238 W83 -V140 -0.0539134019185417 W86 -A138 -0.056772470261645 N81 -P141 -0.0580282715849436 S72 -L80 -0.0596376446565626 S72 -L79 -0.0596430836270831 T85 -A138 -0.0608467684268175 L80 -A138 -0.0618583356117393 W83 -F133 -0.0630996502296899 L73 -N81 -0.0640719638701551 N81 -P88 -0.070189190109895 T85 -V135 -0.0734053553504981 L80 -C90 -0.0786089088079205 C90 -L137 -0.0883633802573285 A84 -P89 -0.0960308399265815 C90 -V135 -0.103439958221254 W83 -A138 -0.106513281975765 L137 -G142 -0.110099598010216 L73 -V135 -0.110691065519165 F82 -P88 -0.11735186411453 F82 -P141 -0.121228867984107 W86 -L137 -0.126733000989557 W83 -V135 -0.13338571867421 W83 -P134 -0.134663752512499 T85 -V140 -0.134676599951864 S72 -P77 -0.136047390168098 N81 -L137 -0.137141504975605 L80 -P141 -0.13954297778784 N81 -V135 -0.148240811126174 A84 -G139 -0.150563708818114 L80 -F133 -0.164376529444661 W86 -G139 -0.165303973910713 F82 -C87 -0.174302230747287 A84 -A138 -0.185194620591824 L73 -L79 -0.187884428758724 W83 -G142 -0.192639494079245 L80 -V136 -0.20674522149329 W83 -P89 -0.215615961626802 N81 -W86 -0.226246026644655 T85 -P141 -0.2617921566849 N81 -V136 -0.300745230983005 S72 -V78 -0.336589210898483 F82 -V136 -0.358925581129418 W83 -V136 -0.400841868405481