[Mon Aug 29 17:52:40 2016] >Input file: TMQ2N5E7M1G.pdb >TM segments: 89-103_ 119-127_ 145-168 MAIDEN score = -16.6375 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- F96 -P162 0.789646303573009 F96 -V164 0.73801517829742 M147 -M152 0.729699187706419 A148 -T153 0.727550488217631 T153 -V159 0.71546101925246 V91 -G161 0.672692419417548 C103 -G166 0.651586843669934 A95 -V159 0.595887969707489 F99 -P162 0.556941369901162 F96 -L163 0.528036405513369 S100 -G166 0.506167121295437 A92 -P162 0.502936383217207 A92 -M160 0.479913407475079 A148 -V154 0.478131477066691 A98 -P162 0.454034843183888 I90 -G157 0.450801417811188 A92 -V159 0.396842539475638 T97 -G165 0.342687552930752 T97 -W167 0.284464678593691 S94 -G161 0.281454325173546 V91 -V159 0.2809304434215 A98 -L126 0.280915128360611 A92 -L156 0.28067395574908 S94 -G124 0.280542824857844 F99 -G166 0.274940549410334 F99 -G123 0.256525099462968 G157 -G165 0.252188663183055 F99 -G161 0.249347609345431 F96 -P158 0.245495813709131 S100 -P162 0.243854485427568 T97 -L168 0.240463079366377 S100 -L168 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