[Fri Aug 26 18:05:24 2016] >Input file: TMQ2TLZ1M1D.pdb >TM segments: 468-479_ 481-500 MAIDEN score = -8.7267 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Q473 -K481 0.441296573293794 V492 -G500 0.383808694465595 A488 -A495 0.376625558133232 A489 -G500 0.329253523709966 K479 -E485 0.329024133830285 E484 -R490 0.282436377645543 K478 -L483 0.246959137909792 K478 -E485 0.211556817740248 K479 -E484 0.211033908086557 E484 -A489 0.178081480449916 K479 -T487 0.167981785705164 L474 -K482 0.160058255943565 A491 -S498 0.157777899175752 A491 -G500 0.143920363774705 K472 -E485 0.138771257549485 A486 -A496 0.131755646044752 K481 -A486 0.128317524858646 Q473 -K478 0.12520137152819 K472 -K479 0.11349939518411 A491 -R499 0.106000848748526 Q473 -E485 0.0997525622854254 A488 -A496 0.0943142901450726 F469 -L474 0.0879716607663068 K472 -K478 0.0866169395059444 E477 -L483 0.085778105076276 F494 -G500 0.0777670391682754 K478 -T487 0.0775508340364599 S468 -K478 0.076659333726758 A493 -G500 0.0718609779325119 L483 -A491 0.0698497615096563 T487 -A495 0.0685270627164627 K472 -E477 0.062403120168089 A488 -G500 0.055398481129737 F469 -K482 0.0511938087285753 E477 -K482 0.0511395478896277 F469 -E477 0.0451048587494487 T487 -V492 0.0450718181214943 T487 -F494 0.0382301404484009 L483 -A493 0.0310559854219878 A488 -A497 0.0276768509677727 E484 -V492 0.025605979081744 E476 -A489 0.0193301981444023 L483 -A488 0.0180219916337201 L474 -K481 0.0173028719620882 R490 -R499 0.0144082744975069 A489 -A497 0.0117804354055982 T487 -A496 0.000544748761820202 K482 -A489 0.000141384286204582 S468 -L474 -0.0051430809177333 Q473 -A486 -0.00560888340816212 L483 -A489 -0.00591133011432587 L474 -K479 -0.0103315030272038 S468 -E477 -0.0103590825786368 R490 -G500 -0.011759372989365 M475 -L483 -0.0167827414186776 E471 -K482 -0.0204800753943855 K472 -K481 -0.0209463335494848 K478 -E484 -0.0239181047564125 E471 -K478 -0.0262363600200581 E477 -A488 -0.0308945062233951 E477 -A489 -0.0314443844650221 V492 -S498 -0.034777796480018 A486 -A495 -0.0370704656842609 K482 -A488 -0.0429310040346462 E476 -A488 -0.0431280857954172 R490 -A495 -0.0434530733851275 K482 -R490 -0.0471033512227832 V470 -E476 -0.0471475159892822 E477 -A486 -0.0479197339642243 Q473 -L483 -0.0498637848020564 E485 -R490 -0.0529233267642866 V470 -K482 -0.0534921069331142 M475 -A486 -0.0571351958173136 E477 -T487 -0.058474073631924 R490 -S498 -0.0611155486737713 E485 -A493 -0.0616469346439255 S468 -E476 -0.061775052309202 K481 -A488 -0.061820153171614 K472 -A486 -0.0637224806054633 K472 -L483 -0.0748960497454063 S468 -M475 -0.0805877235381653 E476 -L483 -0.0824881267960915 E485 -A495 -0.0841059664503621 E485 -A496 -0.0861699282428838 E476 -K481 -0.087135386754192 A489 -S498 -0.0884377764087416 K481 -R490 -0.0888138771985005 E484 -A493 -0.0932122043734092 E476 -K482 -0.0978540976793267 A486 -F494 -0.100570785391053 R490 -A496 -0.100835219288003 A486 -V492 -0.101787759888021 E471 -E477 -0.102635195813143 L483 -V492 -0.10520406365752 E471 -E476 -0.105941108799025 K482 -T487 -0.108195674959279 E476 -E485 -0.112644525698732 V470 -K479 -0.113259737108039 M475 -E485 -0.115549116560613 E477 -E485 -0.117333966532831 K472 -A489 -0.119151855020729 K478 -A488 -0.119505473724556 E484 -A491 -0.120179847899418 K472 -K482 -0.120357029543805 E485 -A491 -0.127382362687113 E476 -E484 -0.130794680296243 F494 -R499 -0.137432103599094 K482 -A491 -0.138817028420219 K481 -A489 -0.139785354653651 L474 -E485 -0.13985132438667 S468 -Q473 -0.1405404303119 M475 -K481 -0.146107717270658 A489 -R499 -0.147976370067045 F469 -A486 -0.156490020137332 K479 -A488 -0.156990570950376 K478 -A489 -0.163076399661952 M475 -K482 -0.17192716528881 V492 -R499 -0.171938918473 A491 -A497 -0.172683178151804 E476 -T487 -0.180026245381378 T487 -A493 -0.1801044155161 A488 -F494 -0.182612316929166 E485 -F494 -0.189195279256232 E476 -A486 -0.191608536791382 L483 -R490 -0.19262752585191 R490 -A497 -0.201149092906581 A493 -S498 -0.20428728884502 A489 -A496 -0.205923398889232 K479 -A486 -0.208308242467525 K482 -V492 -0.208945544828668 A493 -R499 -0.209739140422832 V470 -K478 -0.212058115485146 Q473 -K479 -0.212741189263935 E477 -E484 -0.215788777451279 V470 -E477 -0.221887611998256 Q473 -K482 -0.2219475794011 A489 -A495 -0.227703639006476 F469 -K478 -0.227882124762439 A486 -A493 -0.248589015008971 V470 -M475 -0.256233199581262 K481 -T487 -0.260269502828869 A486 -A491 -0.27717700035312 K478 -A486 -0.307802015138731 E485 -V492 -0.319364849606218 F469 -E476 -0.33426464149783 A495 -G500 -0.33552480716686 F469 -M475 -0.351087085593017 A488 -A493 -0.365192626003579 F469 -K479 -0.380706984329345 A491 -A496 -0.382362492532419 A489 -F494 -0.431570956767732 V492 -A497 -0.442474036153335