[Fri Aug 26 18:05:40 2016] >Input file: TMQ2VYF4M1D.pdb >TM segments: 249-265_ 267-282_ 315-354 MAIDEN score = -12.1843 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y258 -F276 0.920770770578924 L338 -L343 0.904128439058151 E342 -C347 0.773427577555598 L255 -F276 0.688407036606414 Q254 -F276 0.648772295163393 C347 -R353 0.612947203407747 I330 -V335 0.56503372075159 I323 -R350 0.4789115965096 Q261 -P268 0.469987609288322 C347 -S354 0.464857457881799 Q254 -K278 0.453881534563813 P268 -I273 0.451819295507803 Q254 -K271 0.445795233237434 L320 -R350 0.406469964392941 R348 -S354 0.395054656434683 V335 -L343 0.377870348883464 C347 -M352 0.365304559408903 D326 -R350 0.34253288971257 K271 -K278 0.32887600482648 D326 -V335 0.321445702280966 S257 -K267 0.30895187344422 I329 -C347 0.298739133861851 K324 -R350 0.297831363036223 D327 -M352 0.297728548776155 I330 -A337 0.295369865189062 L255 -K260 0.294400884791092 L343 -R348 0.29182528977279 L320 -G351 0.290257472709329 D250 -L255 0.289136680838218 E342 -R348 0.281278652664289 Y258 -I273 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