[Mon Aug 29 18:08:57 2016] >Input file: TMQ3KEH4M6G.pdb >TM segments: 351-369 MAIDEN score = -1.3246 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- W355 -Q361 0.637428081334466 D359 -H366 0.500245871394846 I354 -D359 0.489518416572491 D359 -Y367 0.250713301158838 W355 -P364 0.227624426093063 R356 -Q361 0.184079121035983 W355 -Y362 0.170263131460316 N357 -Y367 0.164537136875012 N360 -H366 0.145807855314759 W355 -H366 0.134563975936297 R356 -A365 0.130236608224726 Y362 -Y367 0.130095962426367 Y352 -Y362 0.128626580596158 N351 -N360 0.114196540582537 D359 -P364 0.0938834968445041 N360 -L368 0.0880386053618567 A353 -Q361 0.0874864778453981 I354 -Y367 0.0653458481711811 I354 -N360 0.0653061142053541 N357 -Y362 0.0478635258335294 R356 -Y362 0.0452547384755384 N357 -A365 0.0444329837670723 Y352 -Q361 0.039413324539959 I354 -H366 0.0263514069271364 N351 -N357 0.0211915095210011 R356 -H366 0.0210329106151833 I354 -A365 0.00865880702126365 F358 -V369 0.00800864320292582 Q361 -Y367 0.0027921951194152 R356 -W363 -0.000769529035081984 Y352 -N357 -0.00231747171803387 W363 -L368 -0.00738113972304166 F358 -A365 -0.00776928814547406 I354 -Q361 -0.0247902021588944 I354 -P364 -0.0272469500193129 Y352 -W363 -0.0292380137146062 Y352 -A365 -0.0513037382235915 R356 -P364 -0.0651479229880358 I354 -Y362 -0.0692216821072946 A353 -N360 -0.0795523303137602 R356 -Y367 -0.0800369142890398 N351 -F358 -0.0969521071689989 I354 -W363 -0.0970851717513748 F358 -P364 -0.107269086740299 N357 -H366 -0.107406089130609 F358 -Y367 -0.108462685616859 W355 -A365 -0.118104256609596 A353 -D359 -0.118233234668483 D359 -A365 -0.132622618361403 N351 -D359 -0.144394916403946 Q361 -H366 -0.15210467492546 F358 -L368 -0.160283597810587 N357 -W363 -0.160512965325772 W355 -Y367 -0.162118091225451 N351 -Q361 -0.168132789317839 D359 -L368 -0.174751848611051 Y352 -F358 -0.179768695508853 Y352 -D359 -0.185566658242278 F358 -W363 -0.204913928154179 N351 -R356 -0.23349263276928 N360 -Y367 -0.242035425011244 W355 -W363 -0.249436747980695 W355 -N360 -0.260826909275713 N360 -A365 -0.27087273682246 F358 -H366 -0.332727964223963 A353 -F358 -0.342649699567811 Y352 -N360 -0.442082792166477