[Mon Aug 29 18:09:13 2016] >Input file: TMQ3KEH4M8G.pdb >TM segments: 315-321_ 363-370 MAIDEN score = -3.1851 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- H320 -H366 0.378610524325969 V316 -D370 0.325733713113566 T321 -H366 0.189875182703251 V316 -L368 0.134634653758175 G318 -P364 0.130537573789622 G318 -L368 0.126055857725793 H320 -W363 0.118173653490545 V319 -L368 0.0945253894013622 V319 -Y367 0.0839733005276384 H320 -P364 0.0579786051860549 V315 -H366 0.0570132110500223 V316 -A365 0.0499635034680912 V315 -Y367 0.0497950776758556 H320 -A365 0.0361435833137271 G318 -Y367 0.0354168536905202 V319 -V369 0.0108187213127522 T321 -P364 -0.0129716469397985 T321 -Y367 -0.013743913897835 G318 -V369 -0.0213268524503345 I317 -A365 -0.0433230665498714 H320 -Y367 -0.0473792392079613 G318 -A365 -0.0787136783154456 V319 -W363 -0.0870778207874707 T321 -A365 -0.0960030592921131 V316 -V369 -0.115802129311913 I317 -P364 -0.124643493899289 G318 -W363 -0.129908893001943 V319 -P364 -0.159800242908821 I317 -Y367 -0.161032897573955 I317 -D370 -0.163094034731881 G318 -H366 -0.183957354778352 V315 -L368 -0.219366311266004 V319 -A365 -0.243790996448803 T321 -W363 -0.263325484497974 V315 -D370 -0.298808155990073 V316 -H366 -0.305209582092225 V319 -H366 -0.307930379346906 V315 -V369 -0.310111079377641 V316 -Y367 -0.362989004548154 I317 -L368 -0.372631701094972 I317 -V369 -0.418486710200255 I317 -H366 -0.522880742473743