[Mon Aug 29 18:11:00 2016] >Input file: TMQ3KPV4M1G.pdb >TM segments: 180-187_ 227-243 MAIDEN score = -2.3500 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V185 -D229 0.691284500865954 L187 -L227 0.554691039391439 L187 -R228 0.434604561087833 E180 -L233 0.294378602280924 R186 -L227 0.278728064451936 T184 -L227 0.241824610147923 E180 -V232 0.230159380264491 V183 -H234 0.194030260238018 L187 -D229 0.176558946644549 R181 -S231 0.167863648453516 R186 -S231 0.162814030784703 E180 -G230 0.127561760936531 R181 -D229 0.12231190117364 V185 -R228 0.104134553294253 T184 -L233 0.103334998344877 L182 -L227 0.101515848212414 R181 -G230 0.0910114083993188 V185 -L233 0.090835321199557 L187 -G230 0.0772675353003152 R186 -L233 0.0728635799899666 V183 -R228 0.067937231322962 H236 -A241 0.0672301149790799 V185 -C235 0.0661806297493364 R186 -R228 0.0620051506420851 S238 -V243 0.048796952255338 L227 -H234 0.0483359682821191 L182 -V232 0.0384646995591069 R186 -V232 0.0377014060191501 L187 -S231 0.0321986875188464 R181 -I237 0.0222404899565256 L182 -H234 0.00965056891097756 L187 -L233 0.00327488844566837 E180 -H234 -0.00667814033715763 R186 -G230 -0.00862295634388466 T184 -V232 -0.0168778825540805 V183 -L227 -0.0176372688207245 L182 -C235 -0.0258050709630915 D229 -H234 -0.0321810000639342 L182 -D229 -0.0395945183111186 R228 -H234 -0.0439058141383435 V185 -V232 -0.0488304954587262 E180 -S231 -0.0616218309645389 L227 -C235 -0.0621146522382032 I237 -S242 -0.0810034834433324 V185 -L227 -0.0834585923248508 T184 -R228 -0.0839033017451873 E180 -V185 -0.08964886215611 L187 -V232 -0.104437286432599 E180 -I237 -0.112434549992471 T184 -H234 -0.113829184196543 T184 -D229 -0.115437912718833 L182 -G230 -0.119058366041396 V183 -G230 -0.123142935725401 R186 -D229 -0.134423500575011 V185 -G230 -0.143194476636254 R181 -H236 -0.143771861218807 R181 -V232 -0.147247617277302 E180 -H236 -0.148674274701083 L182 -R228 -0.165177751438681 V183 -C235 -0.176509370710431 L182 -L233 -0.18752894828013 L182 -S231 -0.191006844342184 V183 -V232 -0.19725758421932 V183 -D229 -0.208413136523531 T184 -G230 -0.219327360498485 T184 -S231 -0.227308138773174 R228 -L233 -0.227621325801631 E180 -C235 -0.244143213857142 V185 -S231 -0.25028721600129 V183 -S231 -0.250428032089604 R181 -H234 -0.258205213798371 V185 -H234 -0.266712438880571 R181 -L233 -0.283898439076557 V183 -L233 -0.373175797552736 L227 -L233 -0.419285979632611 R181 -C235 -0.4540020261234 L227 -V232 -0.463942204331709