[Fri Aug 26 18:27:16 2016] >Input file: TMQ3T113M14D.pdb >TM segments: 178-184_ 190-195 MAIDEN score = -1.1155 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- T182 -T191 0.331211450293872 K183 -S193 0.317675686787739 V184 -C194 0.286078303320723 Q178 -C194 0.224263961227781 S180 -Y192 0.172493737198325 K183 -T191 0.124403387794715 I181 -S193 0.104440744624247 V184 -T191 0.0676188581215173 S180 -S193 0.0566812414061251 V184 -S193 0.0554660933045592 Q178 -S193 0.0196204893123868 K183 -G190 0.0155545299831238 T182 -G190 -0.0485181227049805 T182 -I195 -0.0544604856690429 L179 -S193 -0.0596006867126362 L179 -I195 -0.0914253368653575 T182 -Y192 -0.0941889593161182 L179 -C194 -0.140140536441955 K183 -C194 -0.140867201836241 I181 -Y192 -0.141652131191698 Q178 -I195 -0.145301699458183 V184 -G190 -0.146104426814096 S180 -I195 -0.150733199079921 K183 -Y192 -0.181494814846313 S180 -C194 -0.186704175336152 T182 -S193 -0.219855620653283 I181 -I195 -0.233146086088096 I181 -C194 -0.26083646735749 T182 -C194 -0.288892613961449 V184 -Y192 -0.307044622112994