[Fri Aug 26 18:27:47 2016] >Input file: TMQ3T113M2D.pdb >TM segments: 140-147_ 149-156 MAIDEN score = -1.3542 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C143 -M153 0.47453515922308 V142 -W155 0.386908489585998 C143 -M154 0.325100440924834 C143 -W155 0.315860982553993 V142 -S147 0.192059152426315 C143 -Q152 0.183263594857328 K140 -W155 0.157387445763709 N144 -W155 0.128176641938918 S147 -M154 0.119972004621596 V142 -Q152 0.0911134678211118 P149 -M154 0.0771472811154279 N144 -A151 0.0707459999253759 N144 -Y156 0.0582079296051449 C143 -Q150 0.0549472934610122 C143 -P149 0.00589419707979122 K146 -A151 0.00419942644670424 K140 -Y156 -0.016604198946284 L141 -M153 -0.0229287794628492 V145 -Q150 -0.0417435599174955 V145 -W155 -0.0451578646914417 V145 -M154 -0.0481391922878394 C143 -A151 -0.0484267464682168 N144 -Q150 -0.0515510618719175 V142 -Y156 -0.0527044079555701 V145 -M153 -0.0553131961028157 L141 -M154 -0.059069331862613 V142 -P149 -0.073731331436677 N144 -Q152 -0.0741398414406294 S147 -M153 -0.0840824484635431 K140 -M153 -0.102076676691637 K146 -M154 -0.103382124782416 K140 -M154 -0.134027994623269 N144 -M154 -0.135880879912267 K146 -Q152 -0.141663137915748 S147 -Q152 -0.159553350134911 N144 -M153 -0.162592116756368 N144 -P149 -0.163165825577589 K146 -M153 -0.169420164629938 L141 -Y156 -0.176332477405031 L141 -W155 -0.237373251622955 V142 -M154 -0.247018231983298 C143 -Y156 -0.301399000978486 V142 -M153 -0.345088457423184 V145 -A151 -0.360677937107283 V145 -Q152 -0.386455936108061