[Mon Aug 29 16:39:14 2016] >Input file: TMQ3T113M9G.pdb >TM segments: 96-105_ 110-137 MAIDEN score = -0.0341 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P123 -N128 0.327168318548226 T132 -S137 0.136605442228626 S126 -Q131 0.115724193782428 P122 -G127 0.107407022390223 V115 -T120 0.0986920610290767 T120 -S126 0.0983203846867857 L125 -F130 0.0818122396581655 V119 -L125 0.0747381789050277 L117 -P122 0.0525525229436967 N97 -T102 0.0490693755149088 P122 -N128 0.0461550334919627 Q131 -G136 0.0330395648354642 L124 -D129 0.00279846614091861 S110 -V115 -0.0232440650826651 L105 -S110 -0.0329697482868792 F121 -G127 -0.039889995452981 S114 -V119 -0.0533118952657734 D96 -T102 -0.0556944743298029 D96 -F101 -0.084565376825509 V119 -L124 -0.0963752642064142 N118 -P123 -0.11616390181711 F121 -S126 -0.147724280259207 F130 -E135 -0.177986330328285 F121 -N128 -0.20392820015984 T120 -L125 -0.226319863228849