[Fri Aug 26 16:35:17 2016] >Input file: TMQ3UV71S2D.pdb >TM segments: A897-913 MAIDEN score = -2.5336 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R908A-V913A 0.461326246407217 Y906A-K911A 0.26331622550174 S901A-A909A 0.202321615993712 S901A-Y906A 0.175520168713144 G897A-Y905A 0.171484223260021 Y899A-Y906A 0.157453651006798 Y899A-Y905A 0.135077911983779 Y899A-E907A 0.12253158216716 Y905A-L912A 0.105157160250797 V900A-E907A 0.102575183573202 G897A-A904A 0.101586318717709 A904A-V913A 0.100191128812534 S901A-R908A 0.0932674597486762 A902A-E907A 0.0677751812420873 R903A-K911A 0.0539011439585906 A904A-L912A 0.0361552861540224 S898A-Y906A 0.0338688316592139 V900A-R908A 0.0147357070917353 S901A-E907A 0.00621031377697145 R903A-R908A 0.00553923879972248 Y899A-R908A 0.00214988007495412 V900A-A909A -0.00243076169547329 S898A-E907A -0.0100185400848551 S898A-Y905A -0.0108630822761704 G897A-Y906A -0.0164025952738935 G897A-R903A -0.0246348224359041 E907A-L912A -0.0443588917566293 Y899A-A909A -0.0635182713228128 S898A-R903A -0.0793237446868731 Y905A-V913A -0.0805690419396554 A902A-L910A -0.0837677185226644 R903A-L912A -0.0940573278053587 V900A-Y905A -0.10322459587884 Y905A-L910A -0.116575005678544 A902A-K911A -0.141034504820642 A904A-A909A -0.166902193981443 E907A-V913A -0.167093151645938 R903A-A909A -0.173936755874992 S901A-L910A -0.189281484024414 A902A-A909A -0.192550200668151 S898A-A904A -0.193160852533892 Y906A-L912A -0.206246122233793 R903A-V913A -0.218897208412542 Y905A-K911A -0.22744010744508 R903A-L910A -0.22920779820631 A904A-L910A -0.233548196030219 A902A-R908A -0.250047728573682 Y899A-A904A -0.269878098436037 A904A-K911A -0.275991423002237 G897A-A902A -0.340050237587018 V900A-Y906A -0.363069151409622 Y906A-V913A -0.377647102659334