[Fri Aug 26 16:46:08 2016] >Input file: TMQ476L7M8D.pdb >TM segments: 54-77 MAIDEN score = -1.0461 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- W69 -C76 2.27677895735103 T56 -Y64 1.06057685094562 V54 -L59 0.346729847740749 L59 -Y64 0.295601774830713 S55 -G61 0.293722406536065 D58 -V63 0.287047598481736 G57 -L65 0.179593093553893 S55 -V63 0.136650930206756 S55 -K62 0.135834772869223 K60 -I66 0.135304767889117 V54 -L65 0.0810308800280872 V54 -V63 0.0761789392640191 N67 -V77 0.0702325852428822 L59 -N67 0.0679911221942446 S55 -N67 0.059352203597294 T56 -N67 0.0429317661390209 N67 -S72 0.0415256909855453 G57 -I66 0.0289946317566367 S55 -L65 0.0270987034952388 I66 -T71 0.023982408797981 V54 -K62 0.0206002118999429 S55 -I66 0.018438438353666 N67 -T75 0.0147575674329272 F68 -V77 0.0105637559038012 V54 -N67 0.00629056595735245 F68 -C73 -0.000138607155607762 V54 -Y64 -0.00674635131450074 D58 -L65 -0.00856578973682875 G57 -V63 -0.0127367162356578 V54 -G61 -0.0129649646539951 S72 -V77 -0.017100854108091 G57 -K62 -0.046038524793689 S55 -F68 -0.060727502787572 F68 -T75 -0.0678718129899838 T56 -I66 -0.0706090821983221 D58 -I66 -0.0707345828958394 L59 -L65 -0.0915550839078705 K62 -N67 -0.0935947800531426 A70 -C76 -0.095570760318074 T71 -V77 -0.0982864029025201 G61 -I66 -0.107296128825629 D58 -Y64 -0.126142590276438 T56 -F68 -0.131915620962267 F68 -A74 -0.133779344286284 G57 -Y64 -0.139386068912199 V54 -K60 -0.147225502550378 V54 -F68 -0.149361446538524 N67 -C76 -0.151411074895548 S55 -K60 -0.166753730369664 T56 -G61 -0.171876453356202 T56 -V63 -0.172332532018943 K60 -L65 -0.173464562376596 V54 -I66 -0.211289099158834 W69 -T75 -0.22431007048483 T71 -C76 -0.237200902672741 I66 -C76 -0.254439393898133 W69 -A74 -0.259316278931777 W69 -V77 -0.260492592918126 T56 -K62 -0.263640522439191 L59 -I66 -0.274119146904989 N67 -C73 -0.289352443062228 A70 -V77 -0.292524894369143 T56 -L65 -0.304033839083623 S55 -Y64 -0.305835210873811 A70 -T75 -0.375540077228236 F68 -C76 -0.707661039158159