[Mon Aug 29 16:59:28 2016] >Input file: TMQ497K7M1G.pdb >TM segments: 18-55_ 100-111 MAIDEN score = 48.7642 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- E29 -L36 10 A38 -L43 10 D37 -L43 10 E49 -E109 6.10716563567507 V24 -P46 1.52947073928231 V21 -L48 1.34342741277628 P23 -P46 1.25578908995525 L36 -L43 1.2242668147886 M27 -L43 1.20814366697526 M27 -K42 1.11720687271656 D25 -E44 0.870530598880025 K42 -M101 0.842713211871354 T47 -F110 0.813811215888103 D37 -E44 0.789220545387961 V24 -L45 0.750067944827503 A22 -E49 0.711881260931767 A22 -T47 0.692938967217852 E29 -D37 0.640010924601384 S26 -L36 0.586999292294677 M27 -E44 0.506219733524162 P28 -L36 0.500086396645129 P23 -E111 0.490641204719863 P23 -E50 0.468487621194542 A38 -E44 0.448398495525572 E49 -C54 0.448337724311408 L48 -F110 0.441536180470994 P23 -L48 0.433231092008957 P32 -E44 0.431203848906047 S26 -A38 0.427300582025956 K20 -F110 0.403851205640651 P23 -E109 0.379989083802954 M27 -A38 0.376825638202163 P41 -E104 0.375800680026132 V21 -T47 0.36768030666869 P28 -P46 0.358275848523758 M27 -L36 0.356449884145008 T47 -E102 0.348452963350866 P46 -E109 0.348365599516635 P46 -E104 0.345359468176246 G30 -E44 0.344715852985447 P28 -L43 0.330035495692412 A22 -L48 0.324188513710492 M27 -L45 0.322433908298343 D25 -V40 0.316436682555215 V24 -M108 0.313663876356562 E29 -P41 0.309965443863391 L45 -E102 0.307656071969403 E50 -E109 0.304071493777211 K33 -A38 0.303740324636901 L48 -R107 0.284097090531009 S26 -E44 0.278720269686878 E29 -A38 0.271881353339062 G30 -L36 0.260157901699203 P46 -E102 0.253316682718155 E49 -M108 0.251815346768719 P28 -V40 0.250830896975776 P46 -N51 0.247053158172112 E29 -K42 0.246990757259209 G30 -S35 0.245064750922307 M27 -E39 0.237505897929617 D25 -L43 0.231233312781549 S26 -K33 0.229904495088445 P41 -L103 0.223255124075211 E49 -E111 0.219500437801123 M27 -V40 0.218476161121323 V21 -M108 0.207985333463119 V24 -F110 0.207376541571209 K20 -N51 0.204935438879598 P46 -G52 0.190749734765228 K42 -E104 0.187122036612492 S19 -P46 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