[Mon Aug 29 17:13:53 2016] >Input file: TMQ504C1M20G.pdb >TM segments: 263-277_ 330-339 MAIDEN score = -3.7405 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R276 -L330 0.405640964512163 L269 -V339 0.346047097938987 C271 -V335 0.299291709753073 S272 -P277 0.215937212824912 L269 -I337 0.16418997337487 C271 -S333 0.144306367588134 L269 -S338 0.135937609746517 T270 -S334 0.114609406131502 V267 -S338 0.112553668579698 R276 -N332 0.0954443396497906 S272 -G331 0.0810926922359672 C271 -S338 0.0802561884680002 S274 -V335 0.0788636027326302 G265 -V339 0.0732025151908746 R276 -G331 0.0721989424644338 A275 -N332 0.056014887723999 S272 -I336 0.0527420777531464 T268 -V339 0.0445118165202278 S274 -S334 0.0405826107484013 T270 -A275 0.0331218264903232 V267 -I337 0.0319368327570935 A273 -L330 0.0307434807756515 A275 -S333 0.0288500273613694 C271 -R276 0.0258112290902297 S272 -N332 0.0162045073574909 A273 -I336 0.011639441687036 A275 -G331 0.0109698800705784 T268 -I336 0.0105745280023219 T270 -S333 0.00805210907837406 A275 -L330 -0.00231489853513622 T268 -S338 -0.0029722968847774 T270 -I337 -0.0131920008174973 S272 -I337 -0.0152023150961047 S272 -S334 -0.021342427516426 S272 -L330 -0.0218628360201873 G264 -V339 -0.0257315663726247 C271 -V339 -0.0301658534312166 N266 -V339 -0.0310553709350598 V267 -V339 -0.0396971444491037 A273 -I337 -0.0426566799195278 L263 -T268 -0.044086440293813 P277 -G331 -0.0504765358158465 R276 -S333 -0.0785470802441506 A273 -G331 -0.0807864342009492 S274 -S333 -0.0826090075270658 A273 -S333 -0.0893929340417605 L269 -V335 -0.102121682705691 L263 -V339 -0.115787746309018 A275 -S334 -0.126450606495356 S274 -G331 -0.13111928658599 P277 -N332 -0.136838202387766 L269 -S334 -0.147592397169791 S272 -S333 -0.1523785783223 T268 -I337 -0.15400516288506 L263 -L269 -0.154659051128295 S272 -V335 -0.154927255303305 T270 -V339 -0.194408967327146 C271 -I336 -0.19816537493365 A273 -N332 -0.199532845858955 T270 -S338 -0.200051677322866 A273 -S334 -0.205122137552499 T270 -I336 -0.208890741217423 A273 -V335 -0.230197088978702 C271 -N332 -0.261902618974871 S274 -L330 -0.267837185151804 T270 -V335 -0.267904131268986 S274 -N332 -0.273326137314274 L269 -I336 -0.292589237516354 P277 -L330 -0.385079898515212 C271 -S334 -0.559200259151719 C271 -I337 -0.76963124060854