[Fri Aug 26 17:07:25 2016] >Input file: TMQ53R12M1D.pdb >TM segments: 80-93 MAIDEN score = -1.3883 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R81 -L86 0.291706626794218 T82 -L89 0.226996764373155 G83 -F90 0.198462008948174 F85 -F90 0.150013813997034 N80 -S88 0.136973467365562 S88 -I93 0.0831806956007553 R81 -S88 0.074029759183573 S87 -I93 0.0665843436406558 M84 -S91 0.0604756977760197 M84 -V92 0.0403396422829267 F85 -V92 0.0307329835461294 F85 -S91 0.014510559963229 T82 -F90 -0.012122978183112 T82 -S87 -0.0304351096986841 R81 -L89 -0.0420061189760697 G83 -S91 -0.0453613276610063 N80 -F85 -0.0845947235559028 R81 -S87 -0.0910847186817044 L86 -S91 -0.109084469097852 N80 -L86 -0.119886356643493 N80 -L89 -0.139419455341619 M84 -F90 -0.139715666091323 L86 -V92 -0.2113262285925 S87 -V92 -0.215939350497875 T82 -S88 -0.224430914639706 G83 -S88 -0.268551607844736 N80 -S87 -0.306773030544139 G83 -L89 -0.329692019710194 M84 -L89 -0.391920486316351