[Mon Aug 29 16:43:03 2016] >Input file: TMQ5UEL0M1G.pdb >TM segments: 25-36 MAIDEN score = -0.5969 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P29 -P36 0.356280073310344 P29 -T34 0.205588391281576 K27 -K33 0.200388414020976 S25 -E30 0.125561385017053 S25 -T34 0.083368167272948 S28 -V35 0.0638105585316415 S28 -P36 0.0635448908470373 E30 -V35 0.0279701616783378 T26 -V32 0.0226511009903692 S25 -K33 -0.0157167732460138 P29 -V35 -0.0462177199431419 K27 -T34 -0.0493790954903437 S28 -K33 -0.0653669650587343 S25 -F31 -0.0739528185768694 T26 -T34 -0.0787737002547901 S25 -V32 -0.124913338240981 K27 -V32 -0.184979410147609 K27 -V35 -0.186817534014515 T26 -K33 -0.225890518334451 S28 -T34 -0.234482187598107 T26 -F31 -0.459581360892815