[Fri Aug 26 17:22:35 2016] >Input file: TMQ6GQT5M1D.pdb >TM segments: 91-117_ 119-133 MAIDEN score = 0.6294 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- H121 -Q126 1.84737023550172 V106 -L112 1.27282113116223 L103 -L111 1.02742075199352 F105 -L112 0.760657955250244 L109 -P128 0.643816739383638 V106 -L111 0.640617655379339 I101 -S107 0.612261158595832 L108 -Y113 0.597452546383226 F105 -Y113 0.56414009497802 H119 -Q126 0.553195749793669 L111 -P128 0.55178962190361 L111 -E116 0.486822283421938 S107 -L112 0.459334454415231 L114 -Q126 0.450677109831949 L114 -H119 0.434619029157535 L109 -R129 0.424574678043331 F105 -L111 0.39617294835641 L109 -L114 0.392577450933218 L103 -T130 0.371764016137994 L112 -C117 0.364332475182417 P102 -N133 0.34450887935397 G97 -A132 0.329911134696394 A115 -A127 0.325179967242953 L103 -R129 0.304402091056613 L103 -L112 0.299520339125301 C117 -R123 0.297806258342317 Y98 -D131 0.297609418062823 C94 -I101 0.283519745114122 Y110 -P128 0.273066945043057 L108 -H119 0.261254422367348 Y110 -R129 0.258787228940586 I101 -Y110 0.254230685255622 E116 -C125 0.250904863371728 Y100 -A132 0.24040092308639 S107 -L114 0.235870388992161 A104 -L111 0.229828644598086 P102 -L114 0.228312717355856 S107 -A115 0.226562502624303 F105 -Y110 0.21969824153107 C117 -Q126 0.218955876431448 Y113 -H121 0.216922696853067 Y113 -A127 0.209739828285934 D96 -D131 0.204959183058943 V106 -E116 0.20140397926045 E116 -Q126 0.192607342225267 L103 -Y110 0.191229867789144 L111 -H119 0.19035472353483 Y110 -C125 0.176912529486776 P102 -R129 0.17367506956042 C117 -V122 0.171971256471172 L112 -P128 0.170524478103478 G97 -P102 0.161583111758332 Y113 -C125 0.158775948812981 L109 -Q126 0.155395516615927 V106 -Y113 0.148451044325382 A104 -L112 0.144024242130399 Y100 -L111 0.1433914116377 A104 -Y110 0.142839475616559 V106 -H119 0.142423833713613 L103 -N133 0.130793687998117 A104 -P128 0.118811792271779 C117 -S124 0.112493402904401 P102 -L108 0.110824088623032 A104 -R129 0.107516097966615 S95 -Y100 0.106013479762033 Y100 -Y110 0.102220579758698 P102 -A115 0.100350450001151 Y100 -N133 0.0983204822466099 A104 -T130 0.0975058213241319 H119 -A127 0.0974642303424362 P102 -T130 0.0934305504263246 L103 -A115 0.0917916414915823 L109 -H119 0.0912369680609117 S107 -H119 0.0907644183972878 F105 -A115 0.0876957691116171 F105 -T130 0.0868666190406653 G97 -D131 0.0865337691632315 L111 -C125 0.0849032725177796 Y110 -H119 0.0810398625857163 C120 -P128 0.0785178564868088 Y100 -P128 0.0780960835004203 L99 -F105 0.0770817006518878 L99 -R129 0.0761884945147748 Y98 -P128 0.0760754584238041 L114 -R123 0.0759411629972729 S95 -D131 0.0756473066723657 L114 -V122 0.074257590689242 L112 -A127 0.0703997939097061 Y98 -L103 0.069749034281112 I101 -L109 0.0671452567847695 S92 -G97 0.0646303028604205 A115 -R123 0.060252232448188 L109 -T130 0.0581097937065316 S107 -Q126 0.0557576993055364 L103 -Q126 0.0547604710257135 V106 -T130 0.0522254423904265 S92 -Y98 0.0516591340236752 S107 -T130 0.0497153960885091 A104 -A132 0.0496382700339064 L99 -A132 0.0496145247361182 S107 -E116 0.0484279750319034 I101 -R129 0.0449517422736099 V106 -A127 0.0446495790885972 L112 -Q126 0.0430039644330735 L103 -L109 0.0384128651682918 L114 -T130 0.0370706819306674 L103 -E116 0.0347244522212553 L114 -S124 0.0332958384907861 Y113 -H119 0.0329687980457103 V106 -C117 0.0321463935320405 S92 -L99 0.0313876106505946 A115 -P128 0.0298207777619641 Y100 -Y113 0.0271816930562094 Y113 -S124 0.0254726630421125 A91 -D96 0.0216591484992597 Y110 -H121 0.0190339307764131 Y113 -T130 0.0175513101946052 V106 -P128 0.0113930740936179 A104 -D131 0.0110938030519683 Y100 -V106 0.00846256061934181 F105 -A132 0.0082499139576564 V106 -Q126 0.00692126198444065 F105 -C117 0.00472963184383079 A104 -C117 0.00306265785342896 H121 -A127 0.000953872633993491 L112 -C120 -0.00275941501595156 L108 -C125 -0.00533750415390122 A115 -V122 -0.00678911359437095 L103 -C117 -0.0080638433055551 L99 -T130 -0.00845452816969594 I101 -P128 -0.00963774429760944 C117 -A127 -0.018443250564637 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-L99 -0.111548259121148 D96 -N133 -0.116110434441179 L114 -R129 -0.119037143938052 I101 -L111 -0.122897426717215 A115 -S124 -0.125191581026181 L103 -Y113 -0.127676814055856 I101 -N133 -0.132080297935393 F105 -D131 -0.132765492460783 I101 -T130 -0.13457456101134 Y100 -T130 -0.135215416614438 E116 -H121 -0.138708798271538 Y98 -L109 -0.140060618670604 A115 -H121 -0.141012321335329 L112 -H119 -0.142077654288228 P102 -L111 -0.142726307419786 L108 -Q126 -0.142968785180469 D96 -A132 -0.147373644202057 P93 -Y100 -0.147402045315837 C94 -L99 -0.147498279537221 L99 -D131 -0.150117715051186 I101 -D131 -0.151172550342715 Y113 -P128 -0.152382030455874 L99 -L109 -0.153478825592691 L111 -A132 -0.160211728670135 Y100 -F105 -0.161399446183964 A91 -L99 -0.163039328425369 A104 -L114 -0.163711649553417 P102 -P128 -0.167022488447854 F105 -P128 -0.171705911142519 Y100 -D131 -0.174470725865632 P102 -A132 -0.177072566914183 L103 -A132 -0.178259041922199 L108 -P128 -0.179779192485544 F105 -L114 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-0.305356396513962 Y113 -C120 -0.308648435711038 C94 -Y100 -0.309403427912944 V106 -A115 -0.31752646487479 Y110 -A115 -0.333207860765314 S107 -C117 -0.364196284320188 E116 -P128 -0.366462412401914 H119 -S124 -0.36917685100578 Y113 -Q126 -0.381465070042965 Y98 -N133 -0.404008413109651 L111 -Q126 -0.408410711208834 L109 -C117 -0.411575483169447 V106 -L114 -0.42354175390121 L103 -L114 -0.451620901147492 Y110 -Q126 -0.462133059102122 C120 -C125 -0.509688374485227 P102 -L112 -0.523313780673525 L114 -C125 -0.534796066578846 P102 -L109 -0.545853610880658 L108 -C117 -0.546170051682388