[Mon Aug 29 17:27:58 2016] >Input file: TMQ6MTW4M1G.pdb >TM segments: 407-442_ 535-548 MAIDEN score = -3.5997 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y427 -K439 0.661236896770988 M430 -K439 0.653366306311989 D414 -F547 0.387962698844478 S416 -P538 0.344729887998963 S419 -A426 0.308989535458102 E428 -L433 0.289042835580146 V415 -D545 0.277100780455453 S416 -P546 0.260522802710024 D414 -D539 0.247405276256465 E428 -P437 0.225188969865972 G431 -S440 0.224597243349926 V412 -F547 0.211465071899154 N410 -L433 0.204812780606796 V415 -F544 0.204533188710098 G420 -G535 0.203095598314155 N418 -F544 0.182199597398545 D414 -P546 0.177750557848621 G420 -M430 0.170096654016278 S416 -G543 0.166755195955679 Y427 -S442 0.165218736997769 G424 -Y441 0.156432133533779 G424 -K439 0.154308816350188 G420 -A426 0.153524629178015 D414 -N537 0.153296965952034 L413 -K548 0.152835506803344 V415 -I429 0.15013012788871 E428 -K436 0.148870347912998 E428 -K439 0.146986340372017 N418 -D545 0.145202241648675 G424 -S440 0.144892427047028 E428 -F438 0.13380198011957 T425 -T434 0.12913069065513 G420 -E428 0.125488943012078 T425 -K439 0.124240932159601 D414 -P538 0.119627821427887 S419 -T425 0.118271013454522 V536 -T541 0.110998049358627 F417 -K548 0.110079868705063 G421 -E428 0.105796147171482 P538 -G543 0.104713913214107 G543 -K548 0.104090961019742 S440 -V536 0.103040391785599 F432 -K439 0.100193878625632 V412 -T541 0.100032645872103 F417 -D545 0.0982014792057804 I411 -M430 0.0981521321661436 E428 -D435 0.0972503294340522 G407 -V412 0.0964073766407842 L413 -M430 0.0916905308140577 G420 -V536 0.091433777096368 F417 -A426 0.0873166570813231 I408 -L433 0.0854842782313874 T425 -S440 0.0851602075002481 S416 -T541 0.0850910442950076 M430 -Y441 0.0826020795094062 T434 -S440 0.0763413226448915 S419 -G424 0.0762652287244827 L413 -F544 0.0755190550474385 I411 -T434 0.0753581118560351 V415 -G420 0.0739439979284935 F417 -L422 0.0727963779711791 L422 -E428 0.0721134939601249 L422 -M430 0.0688188366231368 L413 -P538 0.0647105553410974 N537 -F544 0.0633899395566022 A426 -L433 0.0615802887759802 N418 -G424 0.0614710255209379 S416 -V536 0.0603028770243554 L542 -K548 0.0601265242951112 V412 -K548 0.0596639396280103 V415 -G535 0.0590188919163523 S419 -Y427 0.0587414956438677 G431 -Y441 0.0574731163197288 V415 -M430 0.0573143025125535 A426 -P437 0.0571663203646064 L413 -L542 0.0563219536991149 G421 -I429 0.0554714362042965 N418 -Y427 0.0550881303524201 D414 -S419 0.0529267099482021 L413 -A426 0.0529007450885226 T541 -F547 0.0527451130871985 I408 -L413 0.046561052087855 L423 -S442 0.0465357493110277 I429 -S440 0.0442062844010405 S416 -G535 0.0430902362914203 S419 -G535 0.0423981027177234 V415 -Y427 0.040110277691225 A426 -F438 0.0380586375144905 F417 -P546 0.0377995713217771 I429 -P437 0.0346444342590513 S416 -L542 0.0337468334416391 N418 -A426 0.0328651479175228 I429 -F438 0.0325049612510657 S416 -N537 0.031423013820475 V415 -K548 0.0310218406464124 N418 -V536 0.0290433639748775 F432 -P437 0.0284397734657886 D414 -T541 0.0254529076849483 F417 -P538 0.0252963758502331 L413 -V536 0.0248558630202229 G424 -L433 0.0221715122646828 G420 -I429 0.0212355734629206 S416 -G421 0.0194029653003867 V415 -T425 0.0169556076371511 V415 -P538 0.0147325237973301 F432 -F438 0.0139020339561835 A426 -Y441 0.0138553778998354 D435 -S440 0.0133404035523574 V412 -I429 0.0106414426407584 I411 -I429 0.00965803087125039 A426 -S442 0.0095496701413964 V415 -N537 0.00687176140607759 Y441 -G535 0.00443708713562163 G424 -S442 0.00255644964208335 K436 -Y441 0.00210713639078453 D414 -A426 0.000418598165097261 V412 -I540 0.00010723550839753 L423 -K439 -3.76877010817012e-05 L413 -S419 -0.00091865606357942 L423 -G431 -0.0046675937775762 D414 -M430 -0.00486071001615596 L423 -S440 -0.004923165514926 L413 -T425 -0.00612400082533116 Y427 -K436 -0.00864232351528127 N418 -F547 -0.00950301602415227 F432 -S440 -0.00964468796587825 V415 -L422 -0.0100658990352427 L423 -F432 -0.0115382401531186 I411 -F432 -0.0144181512492416 L413 -I540 -0.0151793933397855 G535 -T541 -0.0166832560320542 S440 -G535 -0.016792157394634 L422 -G431 -0.0168796991968971 D539 -F544 -0.0229554508264247 L542 -F547 -0.0234530653419878 G420 -S440 -0.0251200043971982 N418 -L423 -0.025378699549317 A426 -K439 -0.0306721780618879 L413 -N418 -0.0316692962437363 D414 -I540 -0.0323395027234378 L423 -Y441 -0.0330724043565498 S416 -I540 -0.0333155540171805 G424 -F432 -0.0345325418013371 P538 -D545 -0.0361790370372743 N537 -L542 -0.0364329699814117 S416 -D545 -0.037797421027151 L433 -F438 -0.0381456332017773 D414 -L542 -0.0398995100429254 I429 -T434 -0.0407794163173141 P538 -F544 -0.0413084704566796 L422 -S440 -0.0414159464702628 V412 -L542 -0.0420774806154105 V412 -F417 -0.0442418470247166 G535 -I540 -0.0450074433328176 D414 -F544 -0.0470023536725215 T425 -M430 -0.0470313362982691 E428 -S440 -0.0473854314634613 S416 -K548 -0.0492634226020552 G424 -F438 -0.0512341004379464 I540 -D545 -0.051702076179839 A426 -T434 -0.0555413679443495 Y427 -D435 -0.0631993412811843 V412 -P538 -0.0640857583143895 V415 -F547 -0.0643547393676283 V415 -A426 -0.065658622297053 G421 -Y427 -0.0659453327049992 V415 -G543 -0.0704442813468109 F417 -G543 -0.070712495815636 L413 -Y427 -0.0722898511017043 V412 -P546 -0.0745668243301742 T425 -L433 -0.0748700251462728 V415 -P546 -0.0749013587246321 L413 -G431 -0.0752909790255156 L422 -I429 -0.0757483979330771 Y441 -V536 -0.078666335287465 V412 -M430 -0.0795079477639664 G420 -Y427 -0.0823339506352019 I540 -F547 -0.0823518043787157 V412 -F544 -0.0824564033319533 A426 -F432 -0.0830740148400793 V415 -L433 -0.0843026258966217 V415 -V536 -0.08671760125907 L413 -G420 -0.087478448938672 G420 -T425 -0.0885526264855105 Y427 -P437 -0.0903395921629291 N418 -T425 -0.0922039737877665 S416 -F547 -0.0925461629471689 D414 -I429 -0.0937821807665298 N418 -G535 -0.0972786694749148 Y427 -S440 -0.099108485893348 S416 -F544 -0.101137072441755 S419 -V536 -0.101177968011799 Y427 -L433 -0.102223012967437 F417 -F547 -0.102341633080343 V536 -L542 -0.103893306759997 V415 -L423 -0.104702381733797 V412 -N418 -0.104731770583223 L413 -T434 -0.104743983417452 D414 -G543 -0.107649608264575 V415 -E428 -0.108024557056864 L413 -F432 -0.109498684242033 V415 -L542 -0.109998244074686 I429 -K436 -0.112444965152428 S416 -A426 -0.112601335951152 G431 -F438 -0.113047272897479 I411 -F547 -0.113562322139908 F417 -V536 -0.1186197713709 N537 -G543 -0.118664800335615 Y427 -F432 -0.118687309379307 F417 -G535 -0.119475480683112 D414 -G420 -0.119929187303372 D414 -L433 -0.120458617352363 V536 -F544 -0.12113372349354 N418 -I429 -0.121801126029196 I429 -D435 -0.126362558334544 L423 -E428 -0.127740996600074 I540 -P546 -0.128679649701785 Y427 -T434 -0.130128755662371 M430 -P437 -0.131137080677013 V415 -G421 -0.132831185707547 E428 -T434 -0.13613852664627 G424 -G431 -0.138204267114341 V412 -F432 -0.140702209079744 T434 -K439 -0.143641373719798 A426 -S440 -0.145095977117186 M430 -K436 -0.148660273975834 D414 -D545 -0.149103177378199 T541 -P546 -0.153492444965479 G424 -M430 -0.159941671942764 N418 -K548 -0.160368132842034 K439 -V536 -0.163597240611101 Y427 -F438 -0.163769174666426 L413 -F547 -0.164152274754222 T425 -F432 -0.165371824745609 L413 -E428 -0.166026868432181 L433 -K439 -0.171519455949763 D414 -K548 -0.173608729175491 L413 -D539 -0.175648645846364 L413 -L433 -0.176384927193015 L422 -Y427 -0.178333494084839 V412 -D539 -0.183881072674448 M430 -S440 -0.1862685678534 L433 -S440 -0.189138172952703 G431 -P437 -0.193895908247553 M430 -D435 -0.194712522279458 F417 -F544 -0.19815530494459 I411 -L433 -0.199752549065884 G421 -M430 -0.203100159390003 V412 -L433 -0.205006344585699 L423 -M430 -0.218868240014475 L413 -I429 -0.220703253382235 D414 -V536 -0.231510288636863 T425 -G431 -0.232955734592225 G421 -A426 -0.234565770937351 G431 -K439 -0.236639248287442 G424 -I429 -0.237646514978313 G431 -K436 -0.274647774133917 M430 -F438 -0.320788442272539 I429 -K439 -0.327735654038489 Y427 -Y441 -0.388506194639465 L423 -I429 -0.417277626791489 A426 -G431 -0.482597424933287