[Fri Aug 26 17:45:32 2016] >Input file: TMQ6PFE7S2D.pdb >TM segments: D169-198 MAIDEN score = 53.3477 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- E170D-C180D 10 C171D-C180D 10 D172D-C180D 10 A169D-C182D 10 E170D-C182D 10 A169D-V181D 1.55673029101119 E173D-V178D 1.03555184006026 D172D-V181D 0.963047401290638 A169D-N183D 0.496398728638671 E173D-G179D 0.490120599115691 C171D-V178D 0.436715351042555 D172D-C182D 0.423692388045115 Y189D-V194D 0.260515433360932 C171D-V181D 0.242039333310431 D172D-N183D 0.173723077714326 S187D-P193D 0.172926714790772 S190D-C195D 0.137957694434814 E170D-N177D 0.137338308741028 E170D-N183D 0.133879705281279 D174D-C180D 0.0968008321825949 D174D-G179D 0.0865267020690252 C182D-S187D 0.0788455221021028 E173D-C180D 0.0678013735326246 V181D-C186D 0.0615377282080738 A175D-C180D 0.048697266147264 E173D-N183D 0.0412463049705378 A169D-V178D 0.0363725025067936 G188D-V194D 0.0223886596802831 C171D-G179D 0.00809869459962598 A169D-C180D -0.00645152360889734 C171D-I184D -0.00663109834456765 S187D-N192D -0.00850404850802122 D172D-N177D -0.0175396737673443 G188D-P193D -0.0322374540710852 P193D-D198D -0.0356889708904993 C171D-N183D -0.0394484908905459 A169D-D185D -0.0425699837302598 D172D-I184D -0.0588697271603023 E170D-D185D -0.0593186283440068 G179D-I184D -0.0660512966740372 D172D-G179D -0.0949767059051992 I184D-Y189D -0.0987898561276572 E170D-V181D -0.103638576310911 V178D-N183D -0.107395357144142 D174D-V181D -0.110498357992833 A169D-I184D -0.114530203714475 E176D-V181D -0.123679523161761 A169D-G179D -0.142714586444095 C171D-N177D -0.148323817626607 E170D-I184D -0.14858552156895 E170D-G179D -0.172435173888264 D172D-V178D -0.213575920149194 D174D-C182D -0.2445816656743 E173D-C182D -0.256857917499994 E170D-V178D -0.300319941486046 C171D-C182D -0.302431603698325 E173D-V181D -0.342006535568542 C171D-E176D -0.462597254115961