[Fri Aug 26 17:57:40 2016] >Input file: TMQ6XPU4S1D.pdb >TM segments: 43-51_ 54-60 MAIDEN score = -0.0844 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C46 -T57 1.1447822280461 F50 -S56 0.515665669372394 Q47 -K58 0.449687523020504 C46 -N55 0.239944155030997 S51 -K58 0.165353160558417 L44 -T57 0.127972605210651 G48 -W59 0.107340547775562 L44 -W59 0.100893123554727 C46 -S51 0.0916780209089051 Q47 -S56 0.0800704867716497 F50 -K58 0.0775282030854239 G48 -D54 0.0678872507229533 R45 -F60 0.0640597008094144 C46 -K58 0.0632320461850346 I43 -W59 0.0555617674419375 G48 -T57 0.0477081340401924 F50 -W59 0.0437341081215691 T49 -K58 0.0424626289994006 C46 -F60 0.0242596862818159 I43 -K58 0.00605337508617332 G48 -K58 0.00453789275143279 R45 -W59 -0.00155097314324459 F50 -N55 -0.00836651318163195 I43 -T57 -0.0161086427855039 Q47 -T57 -0.0183981074330334 L44 -K58 -0.0263120885377663 R45 -K58 -0.0287279849779321 R45 -S56 -0.0291850294993079 Q47 -N55 -0.0332969353090056 R45 -N55 -0.0345987757782753 I43 -F60 -0.0523044714998395 G48 -F60 -0.0551627929514424 T49 -W59 -0.0569556040677848 R45 -F50 -0.0589150982124305 L44 -S56 -0.0603705557451386 Q47 -W59 -0.0675196360357224 R45 -T57 -0.06855273132145 L44 -F60 -0.0730423992585489 T49 -N55 -0.0775429147619591 Q47 -D54 -0.0894836427740954 T49 -D54 -0.098338406236862 G48 -S56 -0.108737643199637 Q47 -F60 -0.115426165637176 G48 -N55 -0.118556998597804 D54 -W59 -0.13824535109889 C46 -W59 -0.153778488932488 S51 -T57 -0.189909892148864 F50 -T57 -0.218535730219927 T49 -T57 -0.220227147446753 T49 -S56 -0.230342284397993 C46 -S56 -0.290095987420881 C46 -D54 -0.314961423849421 S51 -S56 -0.551231772218175