[Fri Aug 26 18:13:18 2016] >Input file: TMQ76638S2D.pdb >TM segments: 216-236 MAIDEN score = -1.0007 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y225 -Y231 0.144252244985216 Y217 -R222 0.132158676900483 R222 -A227 0.0640682177299546 A227 -L233 0.0514594625205191 R224 -P229 0.0380395056044545 C226 -A232 0.015968654040925 F223 -P229 0.0113870094709603 H216 -L221 -0.0304532770151154 W218 -F223 -0.0323301619950866 C226 -L233 -0.0406798078527402 S220 -Y225 -0.047958316161691 Y225 -G230 -0.0660174416055277 Y225 -A232 -0.072839980339257 P228 -L234 -0.149345875301216 Y217 -F223 -0.160852650767451 W218 -R224 -0.164650091814885 P228 -L233 -0.180079202593671 A227 -A232 -0.232911168405397 C226 -Y231 -0.27987417286181