[Mon Aug 29 18:01:43 2016] >Input file: TMQ79670M1G.pdb >TM segments: 125-134_ 198-201_ 300-306_ 332-334 MAIDEN score = -0.1876 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- F125 -I200 0.429859685505122 L126 -T199 0.33403786901084 M130 -S198 0.250471260388569 C127 -I200 0.199247455383494 V133 -S198 0.135631443357295 D134 -S198 0.075622888725833 L126 -I200 0.0673068423405 C127 -S198 0.0647293676345604 V128 -I200 0.0371151968378394 M130 -T199 0.018323600108952 L126 -I201 -0.0366345398250623 Q129 -S198 -0.0388064900701257 F125 -I201 -0.0582695046877317 L126 -S198 -0.0608314018665101 F125 -T199 -0.105399600656558 N131 -S198 -0.115823619596895 V128 -T199 -0.124075458560608 Q129 -T199 -0.192394868741798 V128 -S198 -0.266835461147518 C127 -T199 -0.276090394112547 C132 -S198 -0.524761785175152