[Fri Aug 26 18:15:20 2016] >Input file: TMQ79DI5M1D.pdb >TM segments: 33-49_ 55-93 MAIDEN score = -13.1810 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- H78 -F84 0.54350484546066 A43 -T67 0.475861705940842 H78 -V83 0.468684458332858 Y47 -W60 0.45620987505199 Y47 -M64 0.323643198823146 W55 -W60 0.303582505687725 A33 -A38 0.27495341473867 W55 -M64 0.266222261756637 G39 -G72 0.262921401723987 A49 -R59 0.25315233663544 T85 -L92 0.235954853359244 Y47 -S56 0.221625239947099 V41 -M64 0.213300876266889 G46 -Q61 0.205458940490559 S65 -A73 0.194387955187704 V88 -V93 0.186628759687011 G39 -Y47 0.183797247503232 S56 -S65 0.179593260596881 I62 -A69 0.17854852580727 P63 -G72 0.177765359604993 A49 -T67 0.176851180531445 S42 -S65 0.167514563441974 P63 -L71 0.158441018798535 T67 -F74 0.157955180473587 G46 -L71 0.15282717173845 T44 -Q61 0.149858470576834 H78 -A86 0.149760000485792 H78 -T85 0.147493574710255 W45 -T67 0.146042668506818 A43 -Q61 0.145531189750912 Y47 -W55 0.145358324107353 G40 -W45 0.141565519596141 I87 -V93 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