[Fri Aug 26 16:35:48 2016] >Input file: TMQ7NY23M1D.pdb >TM segments: 323-343_ 345-374 MAIDEN score = -3.6631 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P335 -I348 1.25379756318315 L357 -K362 0.948957121308872 V338 -I347 0.871258487703907 A354 -K359 0.834763649400848 R336 -I347 0.801460667886433 I337 -T349 0.7302875854642 Q327 -P360 0.656101786409476 S328 -V363 0.624144016645163 R336 -I348 0.621593749318195 I337 -T353 0.609633648316342 S328 -F361 0.603132057955467 P335 -I347 0.593600190412617 A326 -F361 0.574690060821085 A354 -K362 0.56847797807821 D368 -V373 0.553258647374568 G329 -R334 0.552436410673025 V338 -L343 0.549156795080747 F332 -D364 0.521923142116213 P330 -K362 0.509789243898543 V338 -A345 0.499562615510657 V338 -I348 0.49831666759964 Q327 -L357 0.466417490198321 P325 -K362 0.415602072863039 P325 -P360 0.407162586983988 P330 -V363 0.399315405570691 P335 -M350 0.372217519165056 S331 -V363 0.356238941229563 R367 -L372 0.333895780739161 P330 -K358 0.323769556476819 H333 -S351 0.323210479328068 K362 -R369 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