[Fri Aug 26 17:00:16 2016] >Input file: TMQ82420M1D.pdb >TM segments: 34-55 MAIDEN score = -3.7232 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- G45 -A53 0.330186742662041 A37 -G45 0.305866420755343 A38 -G45 0.287622102923707 G41 -S49 0.285921791306419 I42 -T47 0.245593522027141 V46 -S51 0.22676660721334 G39 -T47 0.163723449510485 I42 -G48 0.145655356830707 T40 -G45 0.137400697426182 V46 -S54 0.13721075318494 S49 -S54 0.127091270270734 G48 -S55 0.126452078075914 S34 -G41 0.117843020622757 G44 -A53 0.115975794642813 A43 -S51 0.108281847697818 I42 -L52 0.0918879579248247 L36 -G44 0.0905620716229034 T40 -S49 0.0844136048883156 A43 -L50 0.0839891703676474 A37 -V46 0.0800296025810567 I42 -S51 0.0666055879941293 G44 -L52 0.0548658513670652 A35 -A43 0.0517371927359234 A35 -T40 0.0504444333203296 T40 -G48 0.0468000452285153 G39 -G48 0.0253211658690113 S34 -I42 0.0217969695303548 G41 -L50 0.0120577448276808 G41 -S51 0.0106508968689494 G45 -S54 0.00848880303107036 G44 -S49 0.0070859516204238 S49 -S55 -0.0101329257259271 A35 -G44 -0.0127786949516011 A38 -T47 -0.0222955361982149 L36 -G45 -0.0268404082915898 A38 -V46 -0.0273195479252726 T47 -S55 -0.0319326977788708 G44 -S54 -0.0452063618163303 S34 -G44 -0.0476471643430595 G39 -G45 -0.0497069153819574 G39 -V46 -0.0565790204925483 A43 -L52 -0.0621210593768806 A38 -G44 -0.0755809358672623 A37 -G44 -0.075971830673755 A35 -I42 -0.0771301076570792 I42 -L50 -0.0924429438779377 G44 -S51 -0.0980414347134686 G45 -S51 -0.0998376398319489 L50 -S55 -0.102116162795669 A35 -G41 -0.102521789870174 G41 -G48 -0.108750639424536 V46 -S55 -0.109358304375961 G45 -L52 -0.110046917911436 S34 -A43 -0.117739943962967 G45 -L50 -0.132659274027123 G48 -S54 -0.14345717337575 T47 -S54 -0.148747264285083 I42 -S49 -0.154535092201635 L36 -I42 -0.157075966367161 G48 -A53 -0.170723874296225 A43 -S49 -0.194258001269612 S34 -G39 -0.200561809182473 L36 -A43 -0.206552397852992 V46 -A53 -0.208193399101866 G41 -V46 -0.215550320166251 T40 -T47 -0.220080940779371 A43 -G48 -0.220937655542755 T47 -A53 -0.223727227094746 G41 -T47 -0.232213523241791 A37 -A43 -0.241250154609468 T40 -V46 -0.242599710972526 S34 -T40 -0.252174519785032 G44 -L50 -0.252304226312879 L36 -G41 -0.268194089966562 A38 -A43 -0.283335802252799 G39 -G44 -0.329368276871293 T47 -L52 -0.330322175969271 A37 -I42 -0.381254643119388 V46 -L52 -0.399312527776106