[Fri Aug 26 17:21:11 2016] >Input file: TMQ82U90M1D.pdb >TM segments: 73-91_ 105-120 MAIDEN score = -5.1893 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y82 -S88 0.422118675268263 Q79 -E119 0.2498840769534 L85 -S90 0.237873603564598 L78 -D83 0.237083606132899 Q76 -F84 0.22953338983383 N75 -V80 0.227712396180516 N73 -Q79 0.205893501163515 A77 -K120 0.194840973759087 N73 -L78 0.186761271644618 Y82 -S91 0.176830965482203 L85 -S91 0.167100014060862 N73 -D83 0.148763005092371 N74 -D83 0.142571214352818 S90 -C114 0.140405337607495 S91 -K117 0.140136457277518 Y82 -D89 0.130898261602247 N74 -Q79 0.12794377243309 V80 -K120 0.118617867303564 D83 -S90 0.118009758323014 D83 -K120 0.115771574370691 S91 -R115 0.114902201177084 Q79 -S88 0.104945030981701 D89 -K117 0.100417621739717 S91 -D113 0.0993290100332551 Q76 -L85 0.0958354445533731 S88 -C114 0.0920117085819692 N74 -Y82 0.0863584892673601 S88 -K117 0.0834877015198034 S91 -S111 0.0670160404565783 Q76 -E119 0.0663794574035896 Q79 -R87 0.0561852319679685 S91 -S112 0.0560619771093895 N74 -F81 0.0543521869267306 Q79 -S90 0.0487021720219341 F81 -K120 0.0366692677430471 S88 -E119 0.0342857938478351 V80 -S88 0.033763064396604 S90 -K117 0.0331187051307809 N73 -Y82 0.0283395823830639 N75 -D83 0.0259820891431853 F84 -S90 0.0146123539434546 N75 -E119 0.0104528752459516 D83 -S91 0.00931394603400254 V80 -R87 0.00400871268189995 S105 -N110 0.000689011337764223 F81 -D89 -0.00339979694358306 N75 -K120 -0.00864287464324676 L78 -R87 -0.0123747914637145 Q79 -P86 -0.0307755468444606 Q76 -D83 -0.0357050707600517 R87 -K117 -0.0460279703313664 D83 -S88 -0.053700403749893 V80 -P86 -0.0563325429609747 F81 -S90 -0.0579779400616141 Q79 -V118 -0.0581618068252955 N75 -F81 -0.060514186444951 Y82 -K120 -0.0652107577634959 L78 -E119 -0.0749537332016064 S88 -V118 -0.083736569960017 Y82 -E119 -0.0856678757004459 L109 -C114 -0.0867156920284544 S112 -K117 -0.0871175978848528 A77 -L85 -0.0880995502273443 F81 -R87 -0.0906277036029235 L78 -L85 -0.0925707146562882 V107 -S112 -0.0935918120387385 F84 -D89 -0.0994914424949968 A77 -R87 -0.100460832422034 S91 -L116 -0.100682657688031 L78 -P86 -0.101407399842871 N74 -K120 -0.110621100674522 Q76 -K120 -0.123868087646926 Q79 -K120 -0.123892895519692 F81 -S88 -0.126222631775998 V80 -E119 -0.134372830184617 D83 -E119 -0.145660500647565 N73 -F81 -0.146218670245751 A77 -F84 -0.158950599657967 D83 -D89 -0.16106512611132 L78 -S88 -0.161241285547768 N73 -K120 -0.162345829701407 S88 -L116 -0.171837852313911 L78 -F84 -0.173570457281001 N75 -F84 -0.177059516760434 L78 -K120 -0.178552491616615 Q79 -K117 -0.18715674133164 A77 -D83 -0.231581654770103 D113 -V118 -0.249378403930361 F81 -P86 -0.254271939010489 N73 -V80 -0.266488289886244 Q76 -F81 -0.270551020879152 A77 -Y82 -0.273529813961177 Y82 -S90 -0.310243277055583 N74 -V80 -0.311219217069459 D89 -C114 -0.318725087821375 P86 -S91 -0.332342802715622 Q79 -F84 -0.373313897492869 Q76 -Y82 -0.402984822971349 Q79 -L85 -0.441258765386578 V80 -L85 -0.45250596896817 N75 -Y82 -0.457787379386689 S91 -C114 -0.541712302410133 Y82 -R87 -0.66077752038994