[Fri Aug 26 17:26:05 2016] >Input file: TMQ84VG3M1D.pdb >TM segments: 95-116_ 119-132 MAIDEN score = 8.1580 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I115 -N121 10 D103 -L124 0.87997358033555 N114 -L119 0.814197607200934 D103 -L127 0.768283506835225 L99 -L129 0.681887896788223 I115 -K122 0.560135127754386 I115 -K123 0.548191059575641 V100 -L127 0.411531380468367 Q113 -K123 0.378724168722121 M96 -L129 0.365898678282 M104 -L124 0.361116341033271 E97 -Q113 0.320007501494004 E97 -N114 0.276148157380446 Q106 -G111 0.267931104878006 S98 -N107 0.263308498605448 I115 -P120 0.254201015675273 Q116 -K123 0.247779965681624 V100 -S105 0.235092853591782 M96 -N108 0.223743483753728 M104 -N121 0.222020071094668 V100 -G111 0.220371420515842 T95 -L102 0.214368303401085 E97 -G112 0.209001671937037 E97 -Q106 0.205527599225056 L99 -N128 0.203057542734228 M104 -L129 0.202632216508177 M96 -N132 0.202458369891155 V100 -L109 0.201743713118098 Q113 -N121 0.20067416385111 E97 -G111 0.198819621732552 V100 -G110 0.194271488260998 L102 -N121 0.191150850410546 L102 -N132 0.190320184341624 G111 -N121 0.188254288282588 S98 -L109 0.186847882456061 L102 -P120 0.180391914848186 K122 -L127 0.18031441746575 L102 -N107 0.179620195072643 M96 -G110 0.175216477740113 N114 -K122 0.168789572254719 E101 -N107 0.163363240599133 L99 -N132 0.162182781735519 P120 -R126 0.157780959204426 N114 -K123 0.157769482402472 D103 -N121 0.157701793811154 S105 -K123 0.155006357910505 T95 -L129 0.149113370895276 V100 -L124 0.147216728814318 S98 -G111 0.146460698259159 D103 -N114 0.145884674301767 N107 -L119 0.144002054996919 Q113 -P120 0.141089402438601 S105 -G111 0.134233867741404 M104 -K123 0.131613748172577 M96 -G131 0.126702786724835 E101 -N132 0.12663739401945 E101 -P120 0.124933341057222 L109 -L119 0.123200376275565 E97 -R126 0.120492762752274 D103 -K122 0.118543390952541 Q106 -L124 0.118280082231388 E101 -K123 0.116881466760555 L124 -L129 0.114095556772972 M104 -R126 0.110206464967685 L99 -G131 0.108843973753029 S105 -L124 0.108163177257467 M104 -Q116 0.107892022013928 L102 -L119 0.107812244411083 N107 -N114 0.0977816275905795 N108 -N114 0.0971709781383939 N107 -N121 0.0965029195864146 N108 -N121 0.0964150834368999 D103 -N108 0.0958967145367242 L99 -N121 0.0951664089922841 M104 -N128 0.0903196924755338 M96 -S105 0.089991150856211 E101 -E125 0.0893247676608674 V100 -N107 0.0846155879452515 D103 -L119 0.084472655938848 N107 -P120 0.0834989095155683 S105 -N121 0.0803578550724602 L99 -G110 0.074825934317289 I115 -E125 0.0724948201532141 L102 -L124 0.070489679694254 E97 -N132 0.0700279193903217 L99 -R126 0.0697068781317649 S98 -Q113 0.0691274582872707 M104 -E125 0.0678662879535077 V100 -N114 0.066561354494947 S98 -N128 0.0662692285080673 S105 -E125 0.0659000288465785 V100 -E125 0.0650432001825672 L99 -Q113 0.0633715318003674 S98 -L127 0.0628652638007017 L102 -A130 0.0626130713342903 S105 -L119 0.0614833054231783 M96 -M104 0.0605702867911651 G112 -P120 0.0598118877939311 G110 -N121 0.0597751140333872 P120 -L127 0.0595151752019731 D103 -Q113 0.0585260682905717 L102 -G111 0.0584418423165289 S98 -N121 0.0577740577694055 D103 -N132 0.0560446664291812 S105 -Q113 0.055495559715685 V100 -Q106 0.051717889321611 T95 -D103 0.050501726421369 V100 -K122 0.0501504393842072 L99 -G111 0.049061538588115 L99 -L109 0.0487632483964015 S105 -G110 0.0481085876953598 N108 -Q113 0.0475497848588526 N107 -G112 0.0473544373733938 S105 -G112 0.0463530698327006 S98 -G131 0.0433333801678861 M96 -D103 0.0430843435120729 L99 -L124 0.0406768377540478 Q116 -E125 0.0382565980142915 T95 -N108 0.0371840374968593 L102 -N108 0.0331400060665623 S105 -L127 0.0330331664473786 V100 -K123 0.0314223615114647 E97 -M104 0.0294998029057019 E101 -L124 0.0273432676981902 N121 -R126 0.0244327461689324 E101 -N114 0.0234128726308049 S98 -A130 0.0230682522727301 L102 -G112 0.02206763766298 D103 -N128 0.0218557479309234 V100 -N132 0.0207893234966083 I115 -R126 0.0206001572337302 M104 -I115 0.020457743503548 V100 -I115 0.0200795580893314 L99 -S105 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