[Fri Aug 26 17:28:15 2016] >Input file: TMQ86UE6S13D.pdb >TM segments: A233-240_A244-256 MAIDEN score = 22.2730 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- S234A-W256A 10 C239A-S251A 5.89128180082434 C239A-S250A 1.16653277930278 I233A-W256A 1.04832806146451 L235A-W254A 0.957657087970573 L238A-L252A 0.876977322347482 L235A-W256A 0.788211888914894 L235A-V255A 0.748770809355863 L240A-S250A 0.737477448815319 K244A-V249A 0.699995052093744 I233A-V255A 0.552384879610321 S237A-S251A 0.538879857064803 S237A-W254A 0.490230468441226 C239A-L252A 0.444272040629633 C239A-D253A 0.411609649436116 C239A-I247A 0.323597124770333 A246A-S251A 0.277028736246652 L235A-D253A 0.250846040883993 L240A-S251A 0.2145070711988 L238A-S250A 0.201703057045874 L240A-I247A 0.12763772305289 V245A-S251A 0.123960816557242 S237A-W256A 0.107329873946035 V245A-S250A 0.0926724839817572 L238A-V248A 0.0874874113734627 L240A-A246A 0.0778738232283218 H236A-W256A 0.0684223806229637 H236A-S250A 0.0661039524796656 H236A-D253A 0.0628191336779089 C239A-V248A 0.0611731390028514 S237A-V249A 0.0543311843231731 C239A-V255A 0.0330003092702098 L235A-S251A 0.0301404351075277 S234A-W254A 0.0250852566878974 H236A-V255A 0.0222688909076747 C239A-W254A 0.0219673854689413 L240A-W254A 0.00831686943310217 I247A-L252A 0.00830499588519551 A246A-L252A 0.00137970119106345 L238A-V255A -0.00274718389937778 S237A-L252A -0.0150248195516607 K244A-S251A -0.0215313327722093 S234A-D253A -0.0297595626593612 H236A-S251A -0.033605205841051 C239A-A246A -0.033724883936232 L240A-D253A -0.0392698898546611 S234A-V255A -0.047410214085895 S237A-V255A -0.0497141466166147 L238A-W254A -0.0508129534825947 S237A-S250A -0.060452620018463 L238A-K244A -0.0765359250108464 L238A-W256A -0.106811128651415 C239A-V245A -0.126283403931855 L238A-S251A -0.126685074069425 S234A-L252A -0.132061472983899 I233A-D253A -0.139470275279148 L238A-D253A -0.147238765942013 V248A-D253A -0.161046442781491 L240A-V245A -0.162366359023937 K244A-L252A -0.17233946741058 L240A-V248A -0.18012724537039 V249A-W254A -0.181921314276604 L235A-L252A -0.206429705865468 L240A-V249A -0.260296348995521 L238A-V249A -0.26233808974982 C239A-K244A -0.264499328959565 K244A-S250A -0.289265605100202 C239A-V249A -0.290786647356275 S237A-D253A -0.291342036198055 I233A-W254A -0.332003102048374 L240A-L252A -0.332583695669814 H236A-L252A -0.382796340003742 H236A-W254A -0.418282087229393