[Mon Aug 29 17:28:29 2016] >Input file: TMQ86X19M1G.pdb >TM segments: 58-73_ 80-105_ 139-161 MAIDEN score = -6.2085 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- M63 -K68 10 I93 -L160 1.29280303009263 Y96 -T161 1.10657994506233 I93 -V155 0.808937457044781 I93 -V156 0.730671225154202 I93 -F159 0.67039250983957 I62 -M67 0.656881381520201 L89 -A152 0.586411937547294 I62 -K68 0.566128494041695 R94 -F159 0.486321593284075 V155 -L160 0.457315140162634 R94 -V156 0.455439657532924 E91 -T161 0.447432024435853 P73 -I81 0.425510924143532 L95 -V100 0.39373326540586 A92 -A158 0.378004063522704 A92 -V155 0.376324508964739 Y69 -I81 0.36489450386398 Y69 -V83 0.356250578391786 K141 -I146 0.346611286703936 E91 -F153 0.326814955654962 M63 -Y69 0.311576627252428 A92 -G101 0.29785578311261 A92 -A152 0.293766071075816 K68 -P73 0.289200492984952 W58 -M67 0.280062849646262 E91 -N102 0.265546120806894 Y99 -Q104 0.257363505648886 T82 -T148 0.246178623310585 L97 -N102 0.238277999375501 S60 -L65 0.225874486945436 L149 -Q154 0.225074974399867 Y96 -V156 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