[Mon Aug 29 17:30:33 2016] >Input file: TMQ87979M1G.pdb >TM segments: 35-71_ 112-130 MAIDEN score = -24.3038 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- K48 -L130 0.857953136071863 Q40 -K48 0.412119595909724 Q39 -L44 0.381481355171831 V58 -V119 0.364067809413087 K48 -A124 0.343806935677469 R55 -N125 0.335988002605866 K48 -Q128 0.327153126167497 T57 -E123 0.306729226712127 Q50 -E123 0.302965386964782 V47 -L130 0.297655200128086 L44 -L130 0.297615254872976 L44 -R49 0.278748165144564 R117 -L122 0.278634487232499 R49 -L54 0.271586343095989 T66 -E116 0.25832983336169 K48 -R55 0.242942412451178 Q113 -F121 0.238068220331732 R117 -N125 0.233094530410574 K62 -A70 0.232412992758205 Q42 -Q51 0.229225075341553 R117 -E123 0.228539784563829 T61 -T66 0.22456321476715 R55 -N63 0.223387993635899 R55 -K62 0.21553985444574 Q50 -Q128 0.21513758237947 E114 -V119 0.211784473727681 Q65 -E116 0.211720689662516 Q41 -Q50 0.209487126405256 T69 -Q113 0.209087992231651 V47 -E52 0.202724708815892 R55 -E123 0.201653155043842 K48 -I126 0.197836936294808 E52 -A124 0.194352541049372 Q41 -Q51 0.186490019093982 Q50 -R55 0.183500044927724 K62 -E114 0.181673074960239 K48 -L56 0.176303284529636 Q65 -R117 0.163639602346385 W59 -W112 0.161929195581587 L43 -K48 0.154234828109306 W112 -D120 0.151289662909555 K48 -L53 0.150579812362862 E116 -A124 0.150522706299588 L54 -T127 0.148636526505669 N63 -D120 0.147348564247401 V58 -A124 0.146415960575362 R49 -Q128 0.146158995124151 Q51 -L56 0.14330296277951 T61 -Q113 0.141874613930705 V37 -V46 0.138486874651256 E116 -N125 0.137638602550464 R55 -Q118 0.131557794073817 V58 -L122 0.12867406209848 T57 -T66 0.128218839554306 E52 -N125 0.127818842658132 G60 -E116 0.126358431569677 T61 -W115 0.121800697340039 N63 -W112 0.120869690832061 R49 -T127 0.117305111588962 Q42 -R49 0.113752288805999 L54 -K62 0.113398508326178 Q118 -N125 0.112768064518264 T57 -Q65 0.103238578800671 W59 -R67 0.102050348726485 E114 -E123 0.100295840071083 E116 -F121 0.0960877087382581 G60 -V119 0.0955550925357316 R49 -R55 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