[Mon Aug 29 17:30:53 2016] >Input file: TMQ87981M1G.pdb >TM segments: 39-76_ 108-133 MAIDEN score = -23.3235 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- K48 -L130 0.828519650815101 I71 -K76 0.564260532124945 Q65 -K73 0.443073121768657 Q40 -K48 0.389947511835157 K48 -E131 0.375693461308737 L44 -A133 0.360272367713743 K62 -A70 0.348773877973065 R67 -N109 0.345215022481165 K48 -A124 0.338608290371506 Q51 -E131 0.335302532366477 V58 -V119 0.3346244588763 K48 -Q128 0.332309428725483 Q50 -E123 0.318364883429564 T57 -E123 0.317697946481425 R55 -N125 0.317680835659537 R67 -K73 0.313274913549013 R55 -N63 0.309712791346728 Q41 -E131 0.307213417599926 L44 -R49 0.298278569549842 L44 -L130 0.295644027784664 V47 -L130 0.291770647530586 R117 -E123 0.28771230029273 R117 -L122 0.284345734543781 N109 -R117 0.282177149266329 R49 -L54 0.279552098892526 Q65 -M110 0.271628940790595 M110 -Q118 0.271344822578042 K62 -S108 0.270448647760944 Q41 -E132 0.2656780128817 Q39 -L44 0.261380199484364 Q42 -Q51 0.261259684461248 K48 -R55 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