[Fri Aug 26 17:47:20 2016] >Input file: TMQ8A8I3M1D.pdb >TM segments: 256-267_ 289-291 MAIDEN score = -0.0110 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L259 -T290 0.612219878879996 D263 -P289 0.53583653612739 A258 -T290 0.506156871472774 A257 -L291 0.35755898755102 A262 -T290 0.105041526356688 R256 -T290 0.101966416977712 T260 -T290 -0.00944679562539719 L259 -L291 -0.0255733939424523 A258 -L291 -0.0382917885228686 R256 -L291 -0.0762263856162297 G264 -P289 -0.0776224820757156 H266 -P289 -0.0777775733732771 T260 -L291 -0.104835542046857 A257 -T290 -0.116289132045974 T260 -P289 -0.220906384199092 L261 -T290 -0.235764047471664 L265 -P289 -0.262338040288077 A262 -P289 -0.417148931471394 L261 -P289 -0.567550956374268