[Mon Aug 29 18:09:57 2016] >Input file: TMQ8IUR5S4G.pdb >TM segments: A529-544 MAIDEN score = -0.0617 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- K534A-Q542A 0.320010487702587 M535A-Q542A 0.279404636878434 Q538A-H544A 0.269040316712519 K534A-H544A 0.203779978759526 R539A-H544A 0.1968212880991 Y536A-H544A 0.163602151624284 E532A-Y537A 0.12195126028606 D529A-Y537A 0.119704836504661 T530A-Q538A 0.119334258227799 D529A-Y536A 0.116738753461956 M535A-L543A 0.113552501657728 Q538A-L543A 0.106498081272359 Y536A-L543A 0.0900948914890582 D529A-K534A 0.06934722403038 Y537A-Q542A 0.0668187056464249 A531A-A540A 0.0644729563875608 D529A-M535A 0.0572451661760787 A531A-R539A 0.0385237684624142 T530A-M535A 0.0381939034282848 A533A-Q538A 0.0355201071068958 Y536A-L541A 0.0349019585308747 M535A-H544A 0.0255158684645931 A533A-A540A 0.0240005736559965 A531A-Q538A 0.0180144397367328 K534A-A540A 0.000364695492354183 T530A-R539A -0.00882753858077878 A533A-Q542A -0.018151521876427 E532A-R539A -0.0201001376115849 E532A-A540A -0.029805028766992 Y537A-H544A -0.0385866213412589 E532A-Q538A -0.0573267603024927 A533A-L541A -0.0595681074407417 Y537A-L543A -0.0658158332419621 M535A-A540A -0.0801994924449367 A531A-Y537A -0.0845283708248378 D529A-Q538A -0.0931721049551419 T530A-Y536A -0.100778922312861 T530A-Y537A -0.113063502390817 K534A-R539A -0.126979562256807 K534A-L543A -0.141511045807526 E532A-L541A -0.162360720903356 A533A-R539A -0.188758995592216 K534A-L541A -0.237569469274854 A531A-Y536A -0.242239833545063 M535A-L541A -0.433127643209652 Y536A-Q542A -0.452654152432879