[Mon Aug 29 18:13:45 2016] >Input file: TMQ8IZV2M1G.pdb >TM segments: 107-131 MAIDEN score = 4.3248 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C110 -V117 2.76737418126406 C110 -F116 1.36462749747359 F111 -V117 1.00288147827926 F111 -L118 0.817107670978553 C110 -L118 0.606318822312493 L118 -S128 0.573228582554722 S114 -L120 0.564653229590731 N112 -L120 0.520865282571757 Y119 -A127 0.520108115874114 L109 -V117 0.425022063480792 F111 -Y119 0.325646801454507 L109 -S114 0.297108054055374 G113 -S128 0.296062346719842 F116 -S121 0.287327303633314 L118 -A123 0.280049590823948 N112 -L118 0.272175924043261 N112 -V117 0.263989013692773 V124 -S129 0.193436758804511 A115 -L120 0.188459567666827 N112 -S121 0.188424345559378 S114 -S128 0.183426276139602 V107 -S114 0.1774165188823 V107 -V130 0.172628271073067 V117 -V124 0.158656201408514 N112 -D126 0.153953202894037 G113 -L118 0.147066093903612 G113 -L120 0.143770390946476 C110 -S129 0.130550654467865 A122 -A127 0.128241827149021 D126 -S131 0.125522556973416 N112 -S128 0.121120376798141 F111 -A123 0.120919706186747 G108 -F116 0.119256506982846 G113 -V124 0.113480427621551 G113 -A127 0.110505658545369 C110 -S121 0.109428470244015 L118 -V125 0.109204160745179 G113 -V130 0.107199870324598 V117 -S129 0.106528275188194 G108 -A115 0.106448314721399 A123 -S131 0.103318141980258 N112 -A127 0.103065212880108 C110 -S131 0.0970165808442303 G108 -V130 0.0877185136196301 G108 -S128 0.0812857928268802 A122 -S131 0.0770872991774521 S114 -A123 0.0765717145912195 L118 -S131 0.0736185338716928 V117 -A127 0.0717406490771522 L118 -S129 0.0711102505934189 G108 -S131 0.0709571762357664 N112 -S129 0.0708570571630491 C110 -V130 0.066547316755931 L118 -V124 0.0648478508336856 A115 -A122 0.0638425479374958 C110 -A123 0.0601413098253074 N112 -V130 0.055788740995375 F111 -F116 0.0552447426387745 G113 -V125 0.0522321880129211 S121 -V130 0.0515751182465713 C110 -Y119 0.0501247007454619 L109 -A123 0.0482196009017493 S114 -A122 0.0465409434521531 L120 -V130 0.0437106219467189 L109 -S121 0.0432448980216122 N112 -S131 0.0319382574245837 Y119 -S131 0.0300316249364431 L120 -S129 0.0264343816723739 V124 -V130 0.0245502795471788 G108 -Y119 0.0196506216695393 Y119 -D126 0.0162718292078834 G108 -L120 0.010387062257966 L118 -V130 0.00970283473891698 G113 -S129 0.00569043595557073 C110 -S128 0.00362122480117555 G108 -S129 0.00201707259706341 S114 -S121 0.000595445635978464 S114 -Y119 -0.000479004586846798 A115 -S121 -0.00868593157871 N112 -V124 -0.012279261892999 L109 -L118 -0.0139788913121821 V107 -A115 -0.0178987510959698 V117 -V125 -0.0206503004773739 L109 -S128 -0.0287756293819781 L120 -D126 -0.0337431492616646 S121 -D126 -0.0352243932331059 F116 -V124 -0.0380276970975748 L109 -A115 -0.0393161084632692 F116 -A123 -0.0423109696938004 G108 -S121 -0.0429419768961947 N112 -A123 -0.0474809572850073 C110 -A122 -0.0486726116205061 G108 -V117 -0.0501001621289729 S121 -S129 -0.0548128272532598 F111 -V124 -0.0571094600340398 V107 -S131 -0.0583388693141043 F111 -S128 -0.0602616233266464 V125 -S131 -0.06185258066842 G108 -G113 -0.0629781686714681 A123 -S128 -0.0640052053211981 A115 -A123 -0.0671498994488315 V107 -N112 -0.0676611657034307 G113 -A123 -0.0727423356519518 N112 -A122 -0.0740502649801837 F111 -D126 -0.0760582344053899 F116 -S128 -0.0778287101170733 V107 -Y119 -0.0799842002926969 N112 -Y119 -0.0813147370567462 V125 -V130 -0.0832806689427565 Y119 -V130 -0.0835359033264376 F111 -S129 -0.0864863565816272 L109 -V130 -0.0879702244953799 G113 -A122 -0.0937719681167088 L118 -D126 -0.0998318561846316 V107 -L120 -0.102445237683916 V107 -F116 -0.105469611516647 F111 -A127 -0.106004790994972 V117 -V130 -0.106502535057803 L109 -A122 -0.110826437418027 G108 -S114 -0.113788273935092 F111 -A122 -0.118083724625461 Y119 -S129 -0.12348801457119 F111 -S121 -0.123962574457362 F116 -A122 -0.133854326692477 L120 -A127 -0.15554166155399 A123 -V130 -0.157795363293985 L118 -A127 -0.162554082022456 L120 -V125 -0.162948349037114 V117 -D126 -0.169855468649597 L109 -F116 -0.171245646519385 Y119 -S128 -0.175750097029677 V107 -G113 -0.179146542115639 L120 -S128 -0.181728420234153 F111 -L120 -0.184482244928097 L109 -L120 -0.191512138298841 F111 -S131 -0.202793166000732 Y119 -V124 -0.204261472330463 S121 -A127 -0.204684531214363 F111 -V130 -0.205113413209908 C110 -L120 -0.206388305340941 L109 -Y119 -0.225186574260757 C110 -A115 -0.238622727339515 A122 -V130 -0.24638311989321 G108 -L118 -0.253937883340656 G113 -S121 -0.268263625702734 V117 -A123 -0.271183076069464 V117 -A122 -0.280448431024343 V107 -L118 -0.286047792587018 V117 -S128 -0.328477658839361 V107 -V117 -0.329829442279059 Y119 -V125 -0.386201324311775 A122 -S129 -0.430492964121324 A123 -S129 -0.441209828799103 A122 -S128 -0.470059033220686 S121 -S128 -0.562363804568263 G113 -Y119 -0.832181644988762