[Fri Aug 26 18:32:58 2016] >Input file: TMQ8JZM4S10D.pdb >TM segments: B488-513 MAIDEN score = 5.4418 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C491B-Y501B 2.10773443856819 C493B-C502B 1.33722664929755 Y497B-C502B 1.1393804024965 K490B-L500B 1.12729235136156 Y497B-E505B 0.822395386449071 H498B-E505B 0.658005589827222 C491B-C502B 0.631177434049658 C493B-H498B 0.553562416494253 L492B-C502B 0.483483075908026 P495B-E508B 0.483211876534523 C491B-L500B 0.425995184283935 P495B-E503B 0.424928025401283 C491B-E505B 0.404829195332462 D494B-C502B 0.379193667388434 C491B-E504B 0.371159916212032 G496B-Y501B 0.352111554290168 K490B-Y501B 0.30967353445739 C493B-Y501B 0.28730432119802 P495B-Y501B 0.284739317057663 D494B-Y506B 0.26281815640494 Y506B-P513B 0.261883998482256 Y489B-G499B 0.242478385306862 K490B-H498B 0.219887950105052 E504B-C509B 0.214968897075433 P495B-E504B 0.1640088025108 C493B-E503B 0.157238278752198 Y489B-Y501B 0.132259755017555 Y501B-Y506B 0.126298443725007 D494B-G499B 0.118255431058808 D494B-L500B 0.101663414186273 Y497B-Y506B 0.0933974745883352 S488B-C493B 0.088194275863912 S488B-C502B 0.0868756732226557 E505B-L510B 0.0844274550158136 E503B-E508B 0.0818854812367361 Y506B-A512B 0.0801242377652978 G499B-E504B 0.0783656452595161 S488B-Y501B 0.0763185109464812 G496B-E504B 0.0547548197974618 G499B-E505B 0.0481417347924509 Y497B-C509B 0.0446425065258569 K490B-E503B 0.0428906951766521 S488B-G499B 0.039886303878748 H498B-E508B 0.029902676413843 L500B-E505B 0.0259432649517044 C491B-G496B 0.0258340128976133 G496B-E505B 0.0234132840137073 P495B-N507B 0.0162849950185828 K490B-G499B 0.0160538683408258 G496B-S511B 0.0103718029200741 H498B-N507B 0.00627165253982653 E504B-L510B -0.00572740958744511 G499B-Y506B -0.0232730075102436 G496B-L510B -0.034736785801613 G496B-C509B -0.0377836181398923 P495B-C502B -0.0379104348386852 Y506B-S511B -0.0526211996150447 L492B-L500B -0.0530696394702757 D494B-Y501B -0.0542520163740843 Y497B-E508B -0.0559712125477221 L492B-E504B -0.0613843855257341 P495B-L500B -0.062292358305331 L492B-E505B -0.0644581959018817 E505B-S511B -0.0714826530527558 G499B-E508B -0.0743377663753335 K490B-Y497B -0.081273241366616 L492B-E503B -0.0887511919461692 L492B-Y501B -0.0902581116241068 D494B-E505B -0.0925836588886712 D494B-E503B -0.093164982993105 E505B-A512B -0.0936637609913107 D494B-E504B -0.0961475982905809 Y489B-L500B -0.0969710914838742 L492B-H498B -0.0976497541695243 Y497B-E504B -0.114720115914059 G496B-E503B -0.118279339046719 G496B-N507B -0.129012154999414 C493B-G499B -0.129132404521275 P495B-E505B -0.144414705898966 L500B-Y506B -0.1528834414121 G499B-N507B -0.157032869233133 L492B-Y497B -0.16311500908982 H498B-E503B -0.169452077167585 N507B-P513B -0.180691276257599 N507B-A512B -0.18294918088878 H498B-E504B -0.184410925655418 H498B-L510B -0.185408994678984 S488B-L500B -0.189107821517488 Y497B-L510B -0.195213379975065 P495B-Y506B -0.196552928392991 C491B-Y497B -0.235533174534356 C491B-G499B -0.245927280298099 C491B-E503B -0.264493750861251 C493B-L500B -0.269608905249189 G496B-C502B -0.273355596110904 G496B-Y506B -0.273688963083362 G496B-E508B -0.276241333121146 H498B-Y506B -0.280407680060022 C502B-N507B -0.288945716351284 E508B-P513B -0.298105895695451 K490B-C502B -0.299896201147785 L492B-G499B -0.32562289939114 Y489B-C502B -0.330096860679074 C493B-Y506B -0.332130422320527 C491B-H498B -0.336916329635799 C493B-E505B -0.396471050411926 C493B-E504B -0.403643540271068 Y497B-N507B -0.441540697817967 Y497B-E503B -0.51259957918565