[Fri Aug 26 16:25:13 2016] >Input file: TMQ8K1S7S4D.pdb >TM segments: A105-138 MAIDEN score = 3.2621 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C118A-Y123A 1.2861060130118 T117A-Y123A 1.21387142419326 F127A-A132A 0.616761734732036 D114A-H119A 0.474145833023725 M120A-C126A 0.463232066791246 P121A-C126A 0.35360966683206 H119A-C126A 0.307812505590186 H119A-G125A 0.267984352747706 P116A-G125A 0.192484589889772 M120A-V128A 0.185626478890436 T117A-G125A 0.180608345368877 G125A-G131A 0.152659356493359 P116A-L124A 0.144474699247441 V128A-P134A 0.123902925712266 I115A-G122A 0.117444603769235 S130A-A135A 0.116338284347418 D129A-P134A 0.105768432692103 P121A-V128A 0.0965137845594537 E106A-R111A 0.0773324251087248 G122A-A132A 0.0732016432409912 I115A-P121A 0.0651617922138443 Y123A-V128A 0.0582615884683158 Y112A-T117A 0.053632565938518 D114A-P121A 0.0392962720224466 G125A-S130A 0.0345630505674128 G107A-Y112A 0.0307991757371724 G131A-L136A 0.0211224015182512 C126A-G131A 0.0157591395375746 C113A-H119A 0.00159808092770763 I108A-C113A -0.0104035963872637 T117A-C126A -0.0118679489814983 I115A-M120A -0.0176290401996324 G122A-S130A -0.0194752126180227 G125A-A132A -0.0210059852007707 D114A-M120A -0.0214674531849184 P116A-G122A -0.0216510298309474 P116A-Y123A -0.0352705570241327 C118A-C126A -0.0422968866593045 C118A-G125A -0.050909020711738 F127A-P134A -0.0586122770000443 M120A-G125A -0.0657825928872446 E105A-W110A -0.0718284337525921 C113A-C118A -0.0718575500244008 G125A-P133A -0.0880340180836874 C118A-L124A -0.0887873289502989 G122A-V128A -0.089579580382761 R111A-P116A -0.10450538317806 P116A-P121A -0.105370087084635 C126A-A132A -0.105421720648284 I115A-Y123A -0.134423629745499 E105A-R111A -0.137687448467059 P121A-F127A -0.159458798386829 H119A-L124A -0.185551866953857 T117A-G122A -0.200811106605133 D114A-Y123A -0.202059206385 V128A-P133A -0.206903689317437 T117A-L124A -0.221588827713565 M120A-F127A -0.246479433047082 F127A-P133A -0.254629802835079 G122A-F127A -0.257450209341698 C126A-P133A -0.299142327447944