[Fri Aug 26 16:40:50 2016] >Input file: TMQ8N2M4M1D.pdb >TM segments: 123-156 MAIDEN score = 10.0136 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A126 -C131 10 C131 -Y136 1.34253146762868 L134 -S140 0.934919318072238 L134 -L139 0.755843438838727 Y132 -L139 0.627995436990937 M124 -L130 0.62783847121074 A126 -Y132 0.525058396753876 Y136 -A142 0.498790949206031 C131 -C138 0.490380834014585 A125 -L130 0.41876707273905 L135 -A142 0.373601030680857 Y145 -G155 0.350972096431236 L135 -S140 0.343989354581522 Y132 -S140 0.30739244491668 C138 -Y145 0.274410342469707 V123 -L130 0.259092235822354 Y145 -A152 0.236629773487524 Y136 -G141 0.232093872134039 Y132 -F143 0.229771954845786 V151 -F156 0.208821215008026 G129 -L139 0.199617320606846 L130 -P137 0.199397311617413 Y132 -C138 0.193652791819176 A133 -T144 0.18892915734382 L135 -G141 0.18717221649655 C131 -G141 0.185357959353073 V123 -S128 0.180293777708473 L134 -G141 0.178922781288853 A125 -Y132 0.176474306898019 S128 -L139 0.174976737146089 A133 -F143 0.171939674863545 L130 -L135 0.169322344159591 L130 -C138 0.155480786858422 L135 -T144 0.146099492295363 G148 -I154 0.141095201306334 M124 -L134 0.138868866211275 Y136 -L146 0.136475410663368 G129 -P137 0.129853805624293 S128 -S140 0.125910846296646 Y145 -I154 0.122228431158834 A126 -Y136 0.11617550343205 T144 -I154 0.11278156401646 G141 -V149 0.112031424644357 G129 -G141 0.110802262599556 L135 -L146 0.0985826821583213 A133 -L139 0.0960151886692198 L127 -Y136 0.0956923642907812 V123 -L134 0.095542634080219 L127 -L135 0.0902430405914099 Y145 -Y150 0.0894530265593736 P137 -V147 0.0888404929754119 F143 -Y150 0.0861318610667166 G129 -S140 0.083258277318472 L135 -Y145 0.0831522528032225 M124 -A133 0.0816026482507949 S128 -C138 0.0808185776604882 G141 -V147 0.0800003732373797 V123 -G129 0.0789750300232051 A125 -L135 0.0774980502597198 L130 -G141 0.0745323274672405 A133 -S140 0.0680555257422144 M124 -L135 0.0623570844393573 Y132 -T144 0.0616428130301767 Y132 -A142 0.0597506088140296 L139 -V147 0.0593037456082781 P137 -T144 0.0500098896375238 T144 -V149 0.0452257169948274 L127 -L134 0.035169491241672 S140 -G148 0.0350032252283605 L139 -T144 0.0285829851031831 C131 -P137 0.0216724803659041 V123 -Y132 0.018936585422388 Y132 -G141 0.0175190520270307 G141 -V151 0.0166583107162945 A125 -A133 0.0117786758185179 M124 -Y132 0.00993375014445075 V123 -A133 0.00843131373209449 V147 -G155 0.00626938408992395 L139 -G148 0.000428998447270401 C138 -V147 -0.000434386130703679 G148 -G155 -0.00237960488179023 F143 -V151 -0.00345064455893729 A126 -L134 -0.00580690398387729 T144 -L153 -0.00744486350540363 L134 -L146 -0.012420192724516 A142 -V149 -0.0127087392267173 P137 -L146 -0.0127770187755694 P137 -G148 -0.0134202540177562 A142 -V151 -0.0148706605841475 C131 -A142 -0.0159408225905882 P137 -F143 -0.0160158470700957 L146 -A152 -0.0214661338371638 L139 -L146 -0.0248097899429754 G148 -F156 -0.0319892679392866 A142 -Y150 -0.0322563252708115 T144 -A152 -0.0339560543747446 T144 -G155 -0.0342403129940485 L146 -G155 -0.0363077037388519 Y132 -P137 -0.0367732302737556 Y136 -T144 -0.038735261691473 L127 -A133 -0.05758377573442 A126 -S140 -0.0636951685541778 A133 -Y145 -0.0668938070386442 L146 -L153 -0.0915117705890971 L130 -Y136 -0.0920049596262409 V147 -A152 -0.0949010962051227 S128 -Y136 -0.0954833339117132 T144 -Y150 -0.0955071160505674 V147 -I154 -0.0964661075709703 L134 -Y145 -0.0993435394182063 G141 -Y150 -0.101637829026615 A125 -L134 -0.101735260374446 A125 -C131 -0.103407505214137 G148 -L153 -0.103441904147605 L146 -I154 -0.10463714280776 C138 -L146 -0.105796150105692 V149 -G155 -0.112218054994192 S140 -Y145 -0.115379435248353 L127 -Y132 -0.121848398692652 G129 -C138 -0.126420883580165 A126 -L139 -0.126464775862826 V149 -F156 -0.135058579023052 S128 -A133 -0.136465590993266 Y145 -L153 -0.137121210124412 A133 -G141 -0.14075015379651 L130 -L139 -0.150613735230333 L134 -F143 -0.154331192537836 L130 -A142 -0.154475444357656 L135 -F143 -0.158318753113088 Y150 -G155 -0.159420336175024 S128 -P137 -0.161126727039925 V149 -I154 -0.162258382048043 G141 -G148 -0.162920522498022 Y150 -F156 -0.163848717263098 S140 -V147 -0.173805975405157 Y136 -F143 -0.177427200922283 L134 -A142 -0.178360277095928 L139 -Y145 -0.179976624514776 P137 -Y145 -0.180913875528579 S140 -L146 -0.190870656295473 C138 -G148 -0.192670485969717 T144 -V151 -0.197411252767044 A133 -A142 -0.206632624763721 G129 -Y136 -0.213857042167869 L130 -S140 -0.220466963474082 F143 -G148 -0.225183604071947 L134 -T144 -0.226476750890011 F143 -V149 -0.230971084192966 V147 -L153 -0.231201520157999 A126 -L135 -0.23184943540684 S128 -L134 -0.238004396913727 A126 -A133 -0.247800079444266 M124 -C131 -0.248144849675937 A142 -G148 -0.249666384718821 C138 -T144 -0.268286273362248 G129 -L135 -0.278184364947985 V123 -C131 -0.299478337710884 M124 -G129 -0.308595958824208 A142 -V147 -0.340701370541369 S128 -L135 -0.342567474012927 P137 -A142 -0.352625688908335 G141 -L146 -0.365550178450005 Y145 -V151 -0.36634294954197 A133 -C138 -0.380225525436303 Y136 -Y145 -0.395823467970285 L146 -V151 -0.399804796572132 G129 -L134 -0.415553825226104 C138 -F143 -0.505987538691927 C131 -L139 -0.52169197961456 C131 -S140 -0.531875869661044