[Mon Aug 29 16:59:08 2016] >Input file: TMQ8NDZ6M1G.pdb >TM segments: 66-73_ 79-88 MAIDEN score = 6.5424 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- E71 -I81 1.7469187859813 I70 -I81 1.19025021371628 H69 -I81 1.09524158261916 H69 -L83 0.896364111535361 E71 -D80 0.886745695746053 I70 -L83 0.840230853248011 E71 -D82 0.828338183790094 I70 -H84 0.739802245298035 H69 -H84 0.732124681935213 G68 -H84 0.357305716281788 H69 -D80 0.351263650879951 H69 -K79 0.269242789792175 G68 -L83 0.26563820973614 N67 -T87 0.19686378581007 Y66 -S72 0.171993464139708 S72 -H84 0.170594178419859 G68 -L85 0.161945231697988 D82 -T87 0.161921836113857 D82 -K88 0.161448117983337 K73 -I81 0.149434040235156 N67 -S72 0.115121853524807 E71 -E86 0.104059047783219 Y66 -D82 0.100531939809394 S72 -L83 0.0971825590543247 G68 -K88 0.0943812873012274 Y66 -L85 0.093164483316853 N67 -D82 0.0843557224179903 Y66 -H84 0.0752152205135915 N67 -I81 0.0493866487291021 I70 -D80 0.0446174226299059 I81 -T87 0.0370742090644862 S72 -I81 0.034471490528251 Y66 -T87 0.0243503038923989 H69 -T87 0.0144229001416267 K73 -D80 -0.00480417103521288 I70 -T87 -0.0232649951743884 Y66 -E71 -0.0253427528446881 H69 -K88 -0.0291797376274676 N67 -E86 -0.0343488629774573 N67 -L85 -0.0409783301636055 N67 -H84 -0.0411181807504218 S72 -D82 -0.0448880373609414 K73 -L83 -0.0503095780594002 N67 -L83 -0.051211244595919 I81 -E86 -0.0515873197684953 G68 -D82 -0.0534217604727547 H69 -E86 -0.0607265246797959 Y66 -L83 -0.0677725131770015 E71 -L85 -0.068229785364575 Y66 -E86 -0.0844918910067594 E71 -L83 -0.090366473549909 E71 -K79 -0.0976253573267667 E71 -H84 -0.0991284849749168 I70 -E86 -0.102185110579892 G68 -D80 -0.114473344374395 K73 -D82 -0.116149207894829 S72 -K79 -0.129294576468004 Y66 -D80 -0.129770559705733 N67 -K88 -0.143816447323235 G68 -E86 -0.163901559328953 L83 -K88 -0.166429721663833 G68 -I81 -0.199771941532216 S72 -D80 -0.200762719278769 Y66 -I81 -0.230571754233421 I70 -L85 -0.236921306701759 G68 -T87 -0.268740869547796 I70 -K79 -0.31911478367109 H69 -D82 -0.346598055954765 H69 -L85 -0.393688302234959 I70 -D82 -0.403239113247448 K73 -K79 -1.1153397374271