[Fri Aug 26 18:15:51 2016] >Input file: TMQ8NH22M13D.pdb >TM segments: 94-131_ 140-153 MAIDEN score = 0.8940 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C109 -D143 10 C109 -V144 2.88294743267873 L116 -K128 1.05521112245405 C109 -F145 1.04167836278542 F113 -V144 0.905608056623155 W110 -V144 0.806950232770405 C109 -T140 0.59196261717857 T98 -H148 0.569251529905156 V95 -N152 0.564842491750611 T98 -F151 0.522012027984593 E94 -F151 0.504670590150746 F113 -D143 0.502326837488823 M119 -K128 0.494197889655622 V105 -W110 0.492291170836887 W110 -F145 0.47297443125794 M103 -C108 0.460125866985342 F113 -C118 0.447634988394491 W110 -D143 0.40128023973152 P112 -D143 0.400669406497083 S100 -H148 0.397084642975809 F106 -L111 0.395012422713202 P112 -N117 0.389926855764078 I102 -H148 0.386274156901939 C108 -D143 0.380648259952415 M119 -S124 0.368513661170093 L116 -T140 0.360614209437365 P112 -P127 0.344768022654462 C118 -T141 0.344460853619829 P112 -P130 0.343312886631872 C118 -T140 0.338396591148342 F113 -T141 0.324149387553254 P121 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