[Mon Aug 29 17:49:21 2016] >Input file: TMQ8R366M11G.pdb >TM segments: 42-50_ 86-114_ 121-127_ 132-144 MAIDEN score = 19.9389 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R102 -V109 10 A94 -I112 2.27510791232612 D97 -V109 1.38025059565591 Q101 -V109 1.31308076111013 I45 -L110 1.29202949477352 T127 -Y134 1.22977673090915 F122 -K141 1.19447374301723 A42 -K111 0.991843925678374 Y126 -T132 0.875348821118216 D97 -V108 0.872509057448188 V43 -I112 0.823625624477476 L103 -V109 0.737675923988214 F122 -L144 0.718824077227144 Y123 -L144 0.688373068877344 A94 -L110 0.657959988838486 S46 -R102 0.643093480161024 L98 -L103 0.636473637997977 F122 -V142 0.621697651657751 S95 -V108 0.616226412587075 I45 -V109 0.573862229445468 A42 -I112 0.571891475843962 I45 -V142 0.557128107101351 Q99 -V109 0.555880559205049 G96 -R102 0.542953550796272 V93 -I112 0.531004912164184 G96 -K111 0.490470983525585 R102 -S107 0.481097997205467 Q101 -Y123 0.471311403115211 S50 -V100 0.465425264655219 I45 -Q101 0.456806804554144 V100 -L110 0.443675017521139 S46 -V100 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