[Fri Aug 26 18:08:56 2016] >Input file: TMQ8R4I7S1D.pdb >TM segments: A68-75_A78-83 MAIDEN score = -1.1463 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A74A-C79A 0.259509766541485 A75A-E81A 0.185956411717245 Y70A-Y83A 0.153233433680871 A74A-I80A 0.149884766149937 Y70A-I80A 0.140227377028927 I72A-Y83A 0.132932469277798 I71A-E81A 0.125260215194135 I71A-I80A 0.123691131346558 E73A-E81A 0.086203524610057 A75A-I80A 0.0699529731090691 A74A-L82A 0.068668983764034 I72A-I80A 0.0349555706761686 E73A-L82A -0.000614302749367468 I71A-L82A -0.0842977946550818 I71A-Y83A -0.0896847107955685 Y70A-L82A -0.104713000327207 I72A-C79A -0.105272167408136 Y70A-E81A -0.106811494123551 I71A-C79A -0.120609329879825 I71A-Q78A -0.143580477944662 A75A-L82A -0.147350734791736 A74A-E81A -0.14940652910178 E73A-Q78A -0.180599720516688 I72A-E81A -0.193068056251688 E73A-I80A -0.223612134968689 I72A-Q78A -0.229206668231276 I72A-L82A -0.387506072782243 E73A-C79A -0.410449080113606