[Mon Aug 29 17:59:18 2016] >Input file: TMQ8VZ14M1G.pdb >TM segments: 238-248 MAIDEN score = -0.0541 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y239 -L245 0.648192284724786 Y239 -K244 0.160108179861223 D238 -K244 0.134355633655292 V241 -R246 0.0703713071005321 T240 -R246 0.0597827782424096 Y239 -L247 -0.0176926577429768 T240 -L245 -0.0280857409925588 D238 -R246 -0.031938425673955 Y239 -R246 -0.0642038915922316 V241 -L247 -0.105538242661368 T240 -L247 -0.106331182322061 Y239 -L248 -0.157245568199737 D238 -L247 -0.178416048012927 D238 -D243 -0.183039926343693 D238 -L245 -0.254457813488301