[Mon Aug 29 18:04:46 2016] >Input file: TMQ8WWA1M1G.pdb >TM segments: 29-46_ 77-112_ 114-122 MAIDEN score = -1.4150 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- E106 -D119 0.820940172474033 P107 -P121 0.725099592901675 P107 -A120 0.692982440769601 H85 -D112 0.638938095901151 G35 -S41 0.636410432401846 P102 -L116 0.594340503270468 G35 -F40 0.571547945166442 R80 -L89 0.56165169437603 G103 -V109 0.559231593494666 A37 -E43 0.550914284151689 V109 -L116 0.529086958466464 F40 -Y45 0.493298960872442 K111 -Y117 0.486327352147518 K84 -L89 0.452875162277873 P102 -Q115 0.445816233133574 L39 -Y45 0.405393450086105 S99 -H104 0.384766892893876 H31 -K36 0.356229043633582 V109 -Y117 0.345822441508131 K84 -K111 0.339424170722848 G103 -Y117 0.327986698485628 G38 -Q44 0.324680724815322 H85 -K111 0.323202452297811 G92 -Y117 0.312783147369296 G98 -H104 0.306881501425957 H104 -A120 0.30492401184382 E106 -A120 0.300039680816525 L110 -L116 0.292702868752992 G35 -Y45 0.292026673418253 G101 -Q115 0.291967556912009 L110 -Y117 0.291791402844142 Q78 -E106 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