[Mon Aug 29 18:15:13 2016] >Input file: TMQ8XR80M1G.pdb >TM segments: 291-298_ 384-391 MAIDEN score = 5.4160 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A291 -L390 4.79994418979305 I296 -F386 1.15154643793011 V298 -G384 0.990698240808799 I296 -G384 0.707279304812318 A291 -L388 0.675917954389324 S295 -F386 0.464339901740916 R297 -F386 0.422962428642915 G294 -F386 0.391519254541715 G293 -L390 0.370314689598081 R297 -S387 0.367294568003345 S295 -L388 0.355681284780669 V298 -T385 0.320926368141944 A292 -L388 0.304534809478358 G294 -S387 0.304423129428947 A292 -L390 0.183282218940329 G294 -H389 0.17233379576433 I296 -H389 0.162997416376808 G294 -T385 0.0770943507599027 I296 -L390 0.0755920771137677 A291 -F386 0.0651687720702223 S295 -L390 0.0512222752317355 G294 -G384 0.0114549454042796 G294 -R391 0.00759354303924514 A292 -S387 -0.0123505393635392 G294 -L388 -0.0351061627443182 S295 -T385 -0.0424035380525818 G293 -R391 -0.0512319564711785 G293 -T385 -0.0552048717829987 I296 -S387 -0.0701695259737409 S295 -R391 -0.103811385893505 V298 -L388 -0.111033877291259 I296 -T385 -0.111611705590924 R297 -L388 -0.118881789314474 G293 -F386 -0.125708285895541 A291 -S387 -0.126525741917312 S295 -G384 -0.142800632069249 G294 -L390 -0.146413937462158 G293 -S387 -0.150555006606933 A291 -I296 -0.150695260608958 A292 -F386 -0.161358197412479 R297 -H389 -0.171407225685582 G293 -L388 -0.194404173120758 I296 -L388 -0.244011326661695 A291 -H389 -0.264995843063527 A292 -H389 -0.277520267395532 V298 -S387 -0.296332559502407 V298 -F386 -0.320333708688828 R297 -G384 -0.348274256015695 S295 -H389 -0.36339267141065 S295 -S387 -0.488521567347477 G293 -H389 -0.545083841498347 R297 -T385 -0.553428165169025 A292 -R391 -0.561219194850322 A291 -R391 -0.673358930833942