[Mon Aug 29 16:46:59 2016] >Input file: TMQ8XVA8M1G.pdb >TM segments: 185-207_ 241-262_ 329-353 MAIDEN score = -9.7603 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R335 -V340 1.12870320574989 I331 -I342 1.06356686497283 Y333 -I342 1.0109831424902 L191 -I248 0.802378081008841 L329 -D346 0.786133608658382 I331 -V343 0.78464968239723 A188 -K256 0.759072305568788 I331 -V344 0.679039274555942 R330 -V343 0.676683469246928 L329 -V344 0.605744180858308 Y333 -V340 0.579677368910626 G192 -V252 0.573578307482618 A195 -I248 0.566679117756169 V261 -Y333 0.53032880143013 L191 -V252 0.523415905357963 Q259 -Y333 0.473740816948431 A188 -S255 0.457600880658127 T193 -E249 0.428081545428086 G332 -R345 0.384887408326739 L191 -E249 0.351094524705905 V194 -R199 0.338690929078624 R243 -I248 0.333265740113982 E334 -V343 0.329357873043173 E249 -K256 0.323440708347326 T200 -T245 0.319893612742246 L329 -T347 0.316211321522664 L191 -L251 0.301056104081279 G192 -L250 0.281546493098997 A188 -L251 0.279198711048901 G192 -S247 0.277067723497111 R185 -N254 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