[Fri Aug 26 16:46:09 2016] >Input file: TMQ8XX08M1D.pdb >TM segments: 29-47 MAIDEN score = -10.4967 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V35 -A43 0.159230788654198 E31 -I39 0.129362204478505 L33 -L41 0.114804803599516 V35 -L42 0.101635968917284 V34 -A43 0.0987739867636446 L32 -G40 0.0509559107879363 V34 -G44 0.0426379177041798 I38 -V46 0.0419921066760054 L30 -G40 0.00808019649026148 I39 -V46 -0.0157604827490179 L33 -I38 -0.0165998578616549 V37 -A47 -0.0192702045110362 M36 -G44 -0.0273699820695978 V37 -V46 -0.0375476486694399 L32 -V37 -0.0398142459356094 V34 -L42 -0.039978530609373 E31 -G40 -0.0456259843561502 M36 -A43 -0.0853293986098347 L32 -I39 -0.0861289058068677 G40 -A47 -0.0878811346785824 M36 -L45 -0.089344466790245 I39 -A47 -0.0907133627691712 L30 -I38 -0.0927098682176137 L42 -A47 -0.09289086844697 L29 -I38 -0.094027712312668 L30 -I39 -0.102883740153489 V35 -G44 -0.104454407187734 L32 -L41 -0.10493301959233 V37 -L45 -0.138116381987267 I38 -A47 -0.150643166524698 L33 -L42 -0.158259631964604 L33 -G40 -0.160091672023642 V34 -L41 -0.163431940371014 E31 -I38 -0.163850333596276 L29 -V35 -0.167817863886361 L29 -V37 -0.171257388338541 V37 -G44 -0.177615923884002 G40 -V46 -0.181686312062928 L29 -M36 -0.209049110105793 E31 -M36 -0.209080674503469 V34 -G40 -0.2099616221526 I39 -G44 -0.216851890983816 V35 -G40 -0.230980687187372 I38 -L45 -0.233133264651451 L41 -A47 -0.240457781699481 M36 -L41 -0.252627671053158 E31 -V37 -0.25333517360525 I38 -G44 -0.259462911424597 I38 -A43 -0.317930972340166 L41 -V46 -0.329835131608547 L30 -V37 -0.339803176676964 M36 -L42 -0.355072898656184 V37 -A43 -0.368055827334219 V35 -L41 -0.403038226635955 I39 -L45 -0.411355367222133 L32 -I38 -0.417162243142812 L33 -I39 -0.417409084334677 G40 -L45 -0.421101359954838 L30 -M36 -0.429716235925953 V34 -I39 -0.446349850448376 L30 -V35 -0.44695053103867 V37 -L42 -0.457967553338151 L29 -V34 -0.461427777837519