[Fri Aug 26 16:49:56 2016] >Input file: TMQ8XY69S1D.pdb >TM segments: 434-477_ 479-515 MAIDEN score = -24.3909 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I476 -E481 1.09462471768268 E482 -I487 0.632610231807307 K468 -I473 0.609359235886108 V469 -H474 0.42598354437897 V462 -E467 0.416233676207597 K435 -A440 0.381695232730005 S485 -H492 0.374036172481529 A493 -D498 0.365503664538703 E475 -Q483 0.337116285169791 G448 -G456 0.311422512325552 T458 -T463 0.269997025182793 G495 -H503 0.264638135063077 S441 -G448 0.257264618766605 L507 -A512 0.247089262135532 K468 -H474 0.244229980017542 E488 -Q496 0.231813960107757 Q502 -E509 0.225837589223354 E443 -G450 0.225541516469887 T484 -H492 0.216198162209262 N504 -Q510 0.214539466063821 G486 -A493 0.213155205215775 E453 -Q460 0.205896026305333 D498 -A505 0.205047689108743 E482 -Q489 0.196265478207857 H492 -V500 0.195267353556637 L464 -V469 0.193167617277223 E436 -K444 0.186703165092363 D498 -N504 0.177531467484196 V466 -H474 0.176171241101506 Q489 -M497 0.17439238664367 A461 -V469 0.16591147708321 T447 -A455 0.161082726687181 G486 -M494 0.159032203936206 S491 -Q499 0.158557257042131 E488 -A493 0.156688298414224 S449 -G456 0.142809447164817 H503 -A513 0.142111478649098 E475 -S480 0.137969686694122 A465 -I472 0.132062392976851 K435 -E443 0.130363247422868 I472 -S480 0.128210097062982 G439 -T447 0.127058599791811 H492 -M497 0.126534555788318 I438 -T446 0.126031200075685 E436 -S441 0.125718599720848 G439 -G448 0.119904749718676 D498 -H503 0.11907379162502 G456 -T463 0.117504457192368 E467 -E475 0.116710463068307 T477 -S485 0.11607499365927 A440 -S449 0.113832598731483 Q499 -N504 0.111697979782352 H503 -V508 0.111391545422165 H474 -E482 0.108505376002174 G495 -V500 0.105873798466458 E482 -S491 0.103038283113041 K468 -T477 0.102885692569617 E488 -M494 0.101854819340168 Q502 -L507 0.100674938802934 A440 -T447 0.100631390422588 V462 -A471 0.100060908926829 S485 -I490 0.0998406986701789 E509 -A514 0.0986859819408816 K468 -I476 0.0949094017608845 S485 -A493 0.0921890060277768 A440 -G448 0.089337800720672 A451 -T458 0.0868868137337322 G439 -T446 0.0836945248582099 I476 -T484 0.0834503049610174 L437 -E443 0.0830146247329677 I487 -M497 0.0791973365963576 G448 -A455 0.0788937042451021 A506 -A514 0.0761149981731597 G486 -G495 0.0757531805798285 E436 -L442 0.0745852662832232 E453 -M459 0.0722373401123341 Q460 -E467 0.0655097629599126 A465 -H474 0.0622213952892219 M494 -Q502 0.0550385546984714 R457 -L464 0.0538265685768189 N504 -A512 0.0536497239813525 T463 -I472 0.0527875914606475 Q483 -S491 0.0499673211208798 H492 -D498 0.0492636581506138 M497 -A505 0.0490392445088683 Q454 -A461 0.0451155926907836 L507 -S515 0.0430540520574028 I476 -Q483 0.0427882285416343 Q460 -K468 0.0402956604176774 G495 -N504 0.0378847470661983 A455 -V462 0.0369677439534613 K468 -E475 0.0349740952556594 A455 -T463 0.0342244217259278 A505 -A513 0.0323441470055981 Q454 -V462 0.0320114909613864 S491 -T501 0.0298814724238614 K444 -E453 0.0290243678184989 S480 -Q489 0.0278795831532697 I487 -G495 0.0271101653149732 Q489 -Q496 0.0262873823856462 T447 -G456 0.025239758088752 T446 -Q454 0.0242679291321881 A471 -A479 0.0234540278326869 V469 -T477 0.0234345973967924 G450 -T458 0.0221942665941413 A440 -I445 0.021282769742907 R457 -V462 0.0203288429878201 T501 -V508 0.0200551748203122 A451 -M459 0.0167444919864637 G450 -R457 0.0128365914169599 T470 -S480 0.00998207641218585 M497 -A506 0.00945775203732868 M494 -H503 0.00907040620468447 K444 -S449 0.00811457376519442 E443 -S449 0.00711093450614758 R457 -A465 0.00681243446158497 L442 -G450 0.00622744821343479 A452 -M459 0.00621522742509306 A505 -Q510 0.00500816113618807 L437 -T446 0.00480314838845564 K444 -A452 0.0047869590722085 G448 -R457 0.0042880490017847 I438 -I445 0.00404710349389426 E509 -S515 0.00398056758649412 H503 -A511 0.0026247696849595 A493 -T501 0.000481853616165928 N504 -A513 -0.00455220506453385 I473 -Q483 -0.00751486373230215 S485 -M494 -0.0104483508609743 E481 -I490 -0.0109179816039444 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